Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5071
Gene Symbol: PRKN
PRKN
0.010 AlteredExpression disease BEFREE Microglia inhibited neuronal autophagy and aggravated the damage of CNS in HIV encephalitis; E3 ubiquitin ligase Pellino (pelia) expressed by microglia promotes the replication of virus in neurons. 30967139 2019
Entrez Id: 158506
Gene Symbol: CBLL2
CBLL2
0.010 AlteredExpression disease BEFREE Microglia inhibited neuronal autophagy and aggravated the damage of CNS in HIV encephalitis; E3 ubiquitin ligase Pellino (pelia) expressed by microglia promotes the replication of virus in neurons. 30967139 2019
Entrez Id: 79594
Gene Symbol: MUL1
MUL1
0.010 AlteredExpression disease BEFREE Microglia inhibited neuronal autophagy and aggravated the damage of CNS in HIV encephalitis; E3 ubiquitin ligase Pellino (pelia) expressed by microglia promotes the replication of virus in neurons. 30967139 2019
Entrez Id: 1437
Gene Symbol: CSF2
CSF2
0.010 Biomarker disease BEFREE A major difference between primary HIV infection and the current case series is that untreated HIV encephalitis usually occurs in the setting of late disease and a low CD4 whereas CSF Escape develops in setting of a higher CD4, as well as more robust immune and inflammatory responses. 30079471 2018
Entrez Id: 2215
Gene Symbol: FCGR3B
FCGR3B
0.010 AlteredExpression disease BEFREE Recently, we found that some parenchymal microglia in brain of HIV<sup>+</sup> subjects without encephalitis (HIV/noE) but with varying degrees of neurocognitive impairment express CD16 and CD163, even in the absence of detectable virus production. 29369399 2018
Entrez Id: 9332
Gene Symbol: CD163
CD163
0.010 AlteredExpression disease BEFREE Recently, we found that some parenchymal microglia in brain of HIV<sup>+</sup> subjects without encephalitis (HIV/noE) but with varying degrees of neurocognitive impairment express CD16 and CD163, even in the absence of detectable virus production. 29369399 2018
Entrez Id: 2214
Gene Symbol: FCGR3A
FCGR3A
0.010 AlteredExpression disease BEFREE Recently, we found that some parenchymal microglia in brain of HIV<sup>+</sup> subjects without encephalitis (HIV/noE) but with varying degrees of neurocognitive impairment express CD16 and CD163, even in the absence of detectable virus production. 29369399 2018
Entrez Id: 3918
Gene Symbol: LAMC2
LAMC2
0.010 Biomarker disease BEFREE A major difference between primary HIV infection and the current case series is that untreated HIV encephalitis usually occurs in the setting of late disease and a low CD4 whereas CSF Escape develops in setting of a higher CD4, as well as more robust immune and inflammatory responses. 30079471 2018
Entrez Id: 3162
Gene Symbol: HMOX1
HMOX1
0.010 GeneticVariation disease BEFREE Brain dorsolateral prefrontal cortex tissue samples from an autopsy cohort of HIV-, HIV+, and HIV encephalitis (HIVE) subjects (n = 554) were analyzed as follows: HO-1 (GT)n polymorphism allele lengths were determined by PCR and capillary electrophoresis, A(-413)T SNP alleles were determined by PCR with allele specific probes, and RNA expression of selected neuroimmune markers was analyzed by quantitative PCR. 29510721 2018
Entrez Id: 199
Gene Symbol: AIF1
AIF1
0.010 Biomarker disease BEFREE We found that Meth was associated with marked Iba1 gliosis in the temporo-parietal region (odds ratio, 4.42 (95 % confidence interval, 1.36, 14.39), p = 0.014, n = 62), which remained statistically significant after adjusting for HIV encephalitis, white matter lesions, and opportunistic diseases (n = 61); hepatitis C virus seropositivity (n = 54); and lifetime dependence on alcohol, opiates, and cannabis (n = 62). 27098516 2016
Entrez Id: 7132
Gene Symbol: TNFRSF1A
TNFRSF1A
0.010 Biomarker disease BEFREE The level of ADAM10 was found to be increased in immunohistochemical studies of HIV encephalitis clinical samples and is present with TNF-α and TNFR1 in both astrocytes and neurons. 24648009 2014
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 Biomarker disease BEFREE The level of ADAM10 was found to be increased in immunohistochemical studies of HIV encephalitis clinical samples and is present with TNF-α and TNFR1 in both astrocytes and neurons. 24648009 2014
Entrez Id: 102
Gene Symbol: ADAM10
ADAM10
0.010 AlteredExpression disease BEFREE The level of ADAM10 was found to be increased in immunohistochemical studies of HIV encephalitis clinical samples and is present with TNF-α and TNFR1 in both astrocytes and neurons. 24648009 2014
Entrez Id: 100
Gene Symbol: ADA
ADA
0.010 Biomarker disease BEFREE Neuropathogenic potential of a Southern African HIV-1C isolate (from Zambia; HIV-1C 1084i), a HIV-1C isolate (HIV-1 IndieC1) from Southeast Asia and a HIV-1B isolate (HIV-1 ADA) from the US were tested using in vitro assays to measure neurovirulence and a SCID mouse HIV encephalitis model to measure cognitive deficits. 23758766 2013
Entrez Id: 64421
Gene Symbol: DCLRE1C
DCLRE1C
0.010 Biomarker disease BEFREE Neuropathogenic potential of a Southern African HIV-1C isolate (from Zambia; HIV-1C 1084i), a HIV-1C isolate (HIV-1 IndieC1) from Southeast Asia and a HIV-1B isolate (HIV-1 ADA) from the US were tested using in vitro assays to measure neurovirulence and a SCID mouse HIV encephalitis model to measure cognitive deficits. 23758766 2013
Entrez Id: 9586
Gene Symbol: CREB5
CREB5
0.010 Biomarker disease BEFREE CREB5 computational regulation network construction and analysis between frontal cortex of HIV encephalitis (HIVE) and HIVE-control patients. 21132541 2011
Entrez Id: 6355
Gene Symbol: CCL8
CCL8
0.010 AlteredExpression disease BEFREE The clinical relevance of our findings was evaluated in HIV-encephalitis (HIVE) brain samples in which decreased levels of MCP-2 and increased levels of mir-146a were observed, suggesting a role for mir-146a in the maintenance of HIV-mediated chronic inflammation of the brain. 20181935 2010
Entrez Id: 3482
Gene Symbol: IGF2R
IGF2R
0.010 AlteredExpression disease BEFREE We made a novel observation that IGF2R is highly expressed in microglial nodules in human brains with HIV encephalitis. 20889566 2010
Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
0.010 AlteredExpression disease BEFREE The clinical relevance of our findings was evaluated in HIV-encephalitis (HIVE) brain samples in which decreased levels of MCP-2 and increased levels of mir-146a were observed, suggesting a role for mir-146a in the maintenance of HIV-mediated chronic inflammation of the brain. 20181935 2010
Entrez Id: 7728
Gene Symbol: ZNF175
ZNF175
0.010 AlteredExpression disease BEFREE This mechanism may explain the perivascular macrophage-specific expression of OTK18 in HIV encephalitis brains. 19034670 2009
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.010 AlteredExpression disease BEFREE We found increased levels of osteopontin in the brains of humans with HIV encephalitis and monkeys with simian immunodeficiency virus (SIV) encephalitis. 18616394 2008
Entrez Id: 6869
Gene Symbol: TACR1
TACR1
0.010 AlteredExpression disease BEFREE It was not possible to directly relate the magnitude of NK1R expression to impairment in neuropsychological impairment in this small cohort and none of the subjects had HIV encephalopathy. 18572194 2008
Entrez Id: 6750
Gene Symbol: SST
SST
0.010 AlteredExpression disease BEFREE In analyzing the expression of 15 candidate genes for HIV encephalitis (HIVE) by the presence or absence of major depressive disorder (MDD), we noted significant reductions in the expression of four cytoskeletal genes and somatostatin. 17130427 2006
Entrez Id: 2246
Gene Symbol: FGF1
FGF1
0.010 Biomarker disease BEFREE Fibroblast growth factor 1 (FGF1, also known as acidic FGF) protects selective neuronal populations against neurotoxic effects such as those in Alzheimer's disease (AD) and HIV encephalitis. 15358178 2004
Entrez Id: 5111
Gene Symbol: PCNA
PCNA
0.010 AlteredExpression disease BEFREE Macrophage/microglial accumulation and proliferating cell nuclear antigen expression in the central nervous system in human immunodeficiency virus encephalopathy. 15161643 2004