Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 105375355
Gene Symbol: UPK3B
UPK3B
0.010 AlteredExpression disease BEFREE Gene expression of dab1 and p35 was determined by real-time RT-PCR (reverse transcriptase polymerase chain reaction) in gangliogliomas (n = 14) vs. non-neoplastic central nervous system tissue (n = 20). 15175076 2004
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 GeneticVariation disease BEFREE The rare allele of the TSC2 gene emerges as a candidate for a predisposing factor for the formation of sporadic gangliogliomas. 9210877 1997
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 GeneticVariation disease BEFREE Recent data suggest several components of the insulin-pathway, including TSC1 and TSC2 mutated in tuberous sclerosis complex (TSC), to be altered in gangliogliomas and FCD with Taylor type balloon cells (FCD(IIb)). 17359356 2007
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 Biomarker disease BEFREE DNA sequence analysis of TSC1 and TSC2 was studied in 20 patients with gangliogliomas. 11437991 2001
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 GeneticVariation disease BEFREE A polymorphism in the TSC2 gene has been found to be increased in gangliogliomas, a lesion which is associated with disturbed neuro-glial cell migration pattern. 9928911 1998
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 Biomarker disease BEFREE The reelin signaling and tuberin/insulin growth receptor pathways have recently been implicated in ganglioglioma development. 12125736 2002
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.060 GeneticVariation disease BEFREE SSCP analysis revealed an allelic variant of TSC2 to be significantly increased (exon 41: 50.0% vs controls 14%, P=0.0132), which previously was reported to be increased in gangliogliomas and mineralized focal cortical dysplasia as well. 21555252 2011
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.020 AlteredExpression disease BEFREE Ganglioglioma may be a phenotypic expression of TSC1. 29687738 2018
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.020 GeneticVariation disease BEFREE DNA sequence analysis of TSC1 and TSC2 was studied in 20 patients with gangliogliomas. 11437991 2001
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 AlteredExpression disease LHGDN The authors report here the first unequivocal case of a ganglioglioma harboring aberrant TP53 product that was expressed predominantly in the neuronal component. 15925988 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 AlteredExpression disease BEFREE The authors report here the first unequivocal case of a ganglioglioma harboring aberrant TP53 product that was expressed predominantly in the neuronal component. 15925988 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 GeneticVariation disease BEFREE The present case is unusual in four aspects: (i) it arose from a low-grade ganglioglioma in the absence of previous radiation or chemotherapy, which is the fourth reported case; (ii) the original tumor showed a high proliferative index on flow cytometry but a low Ki-67 labeling index, implying that the application of flow cytometry might play a certain role in predicting biological and clinical behavior of low grade gangliogliomas; (iii) p53 mutation and deletion appeared in the secondary glioblastoma, which was not shown in the original well-differentiated ganglioglioma; and (iv) the transformed glioblastoma showed p16 inactivation detected by methylation and deletion, which are relatively uncommon genetic events in secondary glioblastomas. 14629754 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 GeneticVariation disease BEFREE Findings demonstrate that the presence of TP53 mutation in progressed gangliogliomas should be interpreted as a progression-associated mutation rather than a consequence of treatment. 11453385 2001
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 GeneticVariation disease BEFREE Direct analysis demonstrated loss of p19 expression and p53 mutation in the malignant areas, highly suggestive of these alterations being involved in the malignant progression of the ganglioglioma. 17259542 2007
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.050 GeneticVariation disease BEFREE Importantly, this case contradicts previous reports of p53 and BRAF mutations portending worsened tumor behavior and prognosis and demonstrates that further studies are needed to delineate the role of genetic characterization in the biologic understanding and management of gangliogliomas. 27671879 2016
Entrez Id: 7143
Gene Symbol: TNR
TNR
0.010 AlteredExpression disease BEFREE Gangliogliomas strongly expressed tenascin-R too. 20202125 2010
Entrez Id: 7091
Gene Symbol: TLE4
TLE4
0.010 Biomarker disease BEFREE Novel TLE4-NTRK2 fusion in a ganglioglioma identified by array-CGH and confirmed by NGS: Potential for a gene targeted therapy. 29502353 2018
Entrez Id: 338413
Gene Symbol: TAS2R63P
TAS2R63P
0.010 GeneticVariation disease BEFREE In both GGs and DNTs, the presence of BRAF V600E mutation was significantly associated with the expression of CD34, phosphorylated ribosomal S6 protein (pS6; marker of mTOR pathway activation) in dysplastic neurons and synaptophysin (P < 0.05). 23941441 2014
Entrez Id: 6855
Gene Symbol: SYP
SYP
0.010 GeneticVariation disease BEFREE In both GGs and DNTs, the presence of BRAF V600E mutation was significantly associated with the expression of CD34, phosphorylated ribosomal S6 protein (pS6; marker of mTOR pathway activation) in dysplastic neurons and synaptophysin (P < 0.05). 23941441 2014
Entrez Id: 6794
Gene Symbol: STK11
STK11
0.010 AlteredExpression disease BEFREE Since the LKB1 gene is expressed in the fetal and adult brain, our data would suggest its likely involvement in the pathogenesis of a subset of gangliogliomas. 16733653 2006
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.010 Biomarker disease BEFREE There are several reported cases of AT/RT (or INI1-negative rhabdoid tumors) arising in the setting of other primary brain tumors (gangliogliomas, pleomorphic xanthoastrocytomas, and high-grade gliomas), but the present case 26769252 2016
Entrez Id: 6530
Gene Symbol: SLC6A2
SLC6A2
0.010 Biomarker disease BEFREE Further cases of NET-H3-G34 with dysplastic ganglion cells should be clinically followed to find differences or similarities in their biological behavior, as compared to NET-H3-G34 and anaplastic gangliogliomas. 31109382 2019
Entrez Id: 6505
Gene Symbol: SLC1A1
SLC1A1
0.010 Biomarker disease BEFREE Differential expression of 16 genes including glutamate transporter (EAAC1) and receptor (NMDA2C, mGluR5), growth factor (hepatocyte growth factor), and receptor (platelet derived growth factor receptor beta, fibroblast growth factor receptor 3) mRNAs was detected in GG neurons compared with control neurons. 17437409 2007
Entrez Id: 27352
Gene Symbol: SGSM3
SGSM3
0.020 GeneticVariation disease BEFREE Together, this study highlights that ganglioglioma is characterized by genetic alterations that activate the MAP kinase pathway, with only a small subset of cases that harbor additional pathogenic alterations such as CDKN2A deletion. 29880043 2018
Entrez Id: 27352
Gene Symbol: SGSM3
SGSM3
0.020 GeneticVariation disease BEFREE Activation of the MAP Kinase (MAPK) pathway caused by the BRAFV600E mutation or the KIAA1549-BRAF fusion has been reported in pediatric GG and PA, respectively. 25524464 2014