Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE Selection for T-cell receptor V beta-D beta-J beta gene rearrangements with specificity for a myelin basic protein peptide in brain lesions of multiple sclerosis. 7680433 1993
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.030 Biomarker group BEFREE Conversion to MS was positively associated with the DRB1*1501.DQA1*0102.DQB1*0602 haplotype, but the influence of HLA was only significant in patients with disseminated brain lesions at presentation (MRI positive); MS developed in 86% of MRI-positive, DRB1*1501-positive patients compared with 55% of MRI-positive, DRB1*1501-negative patients (p < 0.025). 8244781 1993
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.030 Biomarker group BEFREE Conversion to MS was positively associated with the DRB1*1501.DQA1*0102.DQB1*0602 haplotype, but the influence of HLA was only significant in patients with disseminated brain lesions at presentation (MRI positive); MS developed in 86% of MRI-positive, DRB1*1501-positive patients compared with 55% of MRI-positive, DRB1*1501-negative patients (p < 0.025). 8244781 1993
Entrez Id: 6962
Gene Symbol: TRBV20OR9-2
TRBV20OR9-2
0.020 GeneticVariation group BEFREE To evaluate the role of candidate genes in the susceptibility to multiple sclerosis (MS) and describe the role of T-cell receptor (TCR) gene rearrangements in the MS brain lesion in identifying a major target of the immune response in this disease. 8230601 1993
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.010 GeneticVariation group BEFREE Conversion to MS was positively associated with the DRB1*1501.DQA1*0102.DQB1*0602 haplotype, but the influence of HLA was only significant in patients with disseminated brain lesions at presentation (MRI positive); MS developed in 86% of MRI-positive, DRB1*1501-positive patients compared with 55% of MRI-positive, DRB1*1501-negative patients (p < 0.025). 8244781 1993
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt-T cell clones are homologous to TCRs from other T cells relevant to MS, including T cells causing experimental allergic encephalomyelitis (EAE) and T cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 8040252 1994
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.030 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt-T cell clones are homologous to TCRs from other T cells relevant to MS, including T cells causing experimental allergic encephalomyelitis (EAE) and T cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 8040252 1994
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt- T-cell clones are homologous to TCRs from other T-cells relevant to MS, including T-cells causing experimental allergic encephalomyelitis (EAE) and T-cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 7544077 1995
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.030 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt- T-cell clones are homologous to TCRs from other T-cells relevant to MS, including T-cells causing experimental allergic encephalomyelitis (EAE) and T-cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 7544077 1995
Entrez Id: 3308
Gene Symbol: HSPA4
HSPA4
0.010 Biomarker group BEFREE In four of four MS and two of three TB patients, the oligoclonal sequences in the HSP70+ T cell lines were identical to one another and to a dominant sequence previously detected in MS brain lesions. 8529121 1995
Entrez Id: 3371
Gene Symbol: TNC
TNC
0.010 AlteredExpression group BEFREE The enhanced expression of tenascin may be involved in CNS wound healing, and may also affect neurite growth within and around a brain lesion. 7529300 1995
Entrez Id: 3251
Gene Symbol: HPRT1
HPRT1
0.010 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt- T-cell clones are homologous to TCRs from other T-cells relevant to MS, including T-cells causing experimental allergic encephalomyelitis (EAE) and T-cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 7544077 1995
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.020 Biomarker group BEFREE Lymphotoxin-alpha (LT-alpha) and tumour necrosis factor-alpha (TNF-alpha) promote inflammation in autoimmune diseases and have been detected in the multiple sclerosis (MS) brain lesions and blood, suggesting these cytokines are also present in the cerebrospinal fluid (CSF). 8964905 1996
Entrez Id: 4049
Gene Symbol: LTA
LTA
0.010 Biomarker group BEFREE Lymphotoxin-alpha (LT-alpha) and tumour necrosis factor-alpha (TNF-alpha) promote inflammation in autoimmune diseases and have been detected in the multiple sclerosis (MS) brain lesions and blood, suggesting these cytokines are also present in the cerebrospinal fluid (CSF). 8964905 1996
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE Furthermore, T cells with specificity for MBP were identified in the brain lesions of the patients. 9034723 1997
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.030 GeneticVariation group BEFREE To better understand the nature of the T cell response in this disease, we analyzed TCR expression in the brain lesions using PCR for quantitative assessment of TCRBV gene transcripts, together with size and sequence analysis of the third complementarity-determining region (CDR3) of the dominant TCR rearrangements. 9013988 1997
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.030 AlteredExpression group BEFREE Inflammatory cytokine (tumor necrosis factor-alpha, interleukin-1 beta, interleukin-4, interleukin-6 and interferon-gamma) gene expression was increased in multiple sclerosis brain lesions, as has been reported previously, but much less so in CER brain lesions. 9143252 1997
Entrez Id: 6962
Gene Symbol: TRBV20OR9-2
TRBV20OR9-2
0.020 AlteredExpression group BEFREE To better understand the nature of the T cell response in this disease, we analyzed TCR expression in the brain lesions using PCR for quantitative assessment of TCRBV gene transcripts, together with size and sequence analysis of the third complementarity-determining region (CDR3) of the dominant TCR rearrangements. 9013988 1997
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.050 GeneticVariation group BEFREE Identification of tuberous sclerosis complex (TSC) gene mutations has fostered understanding of how brain lesions in TSC are formed. 10534239 1999
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.010 GeneticVariation group BEFREE Identification of tuberous sclerosis complex (TSC) gene mutations has fostered understanding of how brain lesions in TSC are formed. 10534239 1999
Entrez Id: 54997
Gene Symbol: TESC
TESC
0.010 GeneticVariation group BEFREE Identification of tuberous sclerosis complex (TSC) gene mutations has fostered understanding of how brain lesions in TSC are formed. 10534239 1999
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.030 AlteredExpression group BEFREE A major proportion of the IFNgamma mRNA expressing lymphocytes belonged to the CD4+ lineage, which concords with the cellular composition of MS brain lesions, findings in experimental models and the HLA class II haplotype association in MS. 10809917 2000
Entrez Id: 348
Gene Symbol: APOE
APOE
0.030 GeneticVariation group BEFREE Apolipoprotein E genotype related differences in brain lesions of multiple sclerosis. 10864599 2000
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.010 AlteredExpression group BEFREE Surprisingly, we found that lack of p53 expression induces apoptotic brain lesions, accompanied by learning deficiency and behavioral alterations. p53-deficient mice show an unexpected overexpression of p21(waf1) with subsequent down-regulation of PS1 in their brains. 10805794 2000
Entrez Id: 5008
Gene Symbol: OSM
OSM
0.010 AlteredExpression group BEFREE Effects of oncostatin M on human cerebral endothelial cells and expression in inflammatory brain lesions. 11706938 2001