Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.050 AlteredExpression group BEFREE TSC1/2 loss of heterozygosity (LOH) and the subsequent complete loss of TSC regulatory activity in null cells causes mTORC1 dysregulation and TSC-associated brain lesions or other tissue tumors. 30144504 2018
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.050 Biomarker group BEFREE Tuberin binding was also reduced for 2 TSC1 stop mutants (hamartin and hamartin) that are present in brain lesions of TSC patients. 19918125 2009
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.050 GeneticVariation group BEFREE Histopathologic similarities between MCDs and dysplastic brain lesions in the autosomal inherited neurocutaneous phacomatosis tuberous sclerosis (TSC), which affects the TSC1 and/or TSC2 genes, suggest common pathogenetic mechanisms. 16042315 2005
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.050 GeneticVariation group BEFREE Identification of tuberous sclerosis complex (TSC) gene mutations has fostered understanding of how brain lesions in TSC are formed. 10534239 1999
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.040 GeneticVariation group BEFREE Herein, we studied histopathological and molecular changes in brain lesions of the Eker rat model carrying germline mutation of the tsc2 gene, predisposed to multiple neoplasias. 31820275 2020
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.040 Biomarker group BEFREE Episodic relapses of the disease which lead to brain lesions and irreversible neurological dysfunctions could be decreased by the interferon-beta (IFN-β) therapy in most of the MS patients. 31649263 2020
Entrez Id: 4137
Gene Symbol: MAPT
MAPT
0.040 Biomarker group BEFREE Various neurodegenerative diseases, including Alzheimer's disease (AD), are related to abnormal hyperphosphorylated microtubule-associated protein tau accumulation in brain lesions. 30907318 2019
Entrez Id: 4137
Gene Symbol: MAPT
MAPT
0.040 Biomarker group BEFREE Brain lesions in Alzheimer's disease (AD) include amyloid plaques made of Aβ peptides and neurofibrillary tangles composed of hyperphosphorylated tau protein with synaptic and neuronal loss and neuroinflammation. 30821420 2019
Entrez Id: 4137
Gene Symbol: MAPT
MAPT
0.040 Biomarker group BEFREE The progressive spread of pathological brain lesions containing aggregated tau protein is a hallmark of Alzheimer's disease and other neurodegenerative diseases. 28882310 2017
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.040 Biomarker group BEFREE In DECIDE, daclizumab demonstrated superior efficacy in reducing relapses, 24-week confirmed disability progression, and brain lesions (assessed by magnetic resonance imaging [MRI]) versus intramuscular interferon beta-1a in relapsing-remitting multiple sclerosis. 28104250 2017
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.040 AlteredExpression group BEFREE Familial Cerebral Cavernous Malformation type 1 (CCM1) is an autosomal dominant disease caused by mutations in the Krev Interaction Trapped 1 (KRIT1/CCM1) gene, and characterized by multiple brain lesions. 26795600 2016
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.040 AlteredExpression group BEFREE Familial cerebral cavernous malformation type 1 (CCM1) is an autosomal dominant disease caused by mutations in the Krev Interaction Trapped 1 (KRIT1/CCM1) gene, and characterized by multiple brain lesions that often result in intracerebral hemorrhage (ICH), seizures, and neurological deficits. 25472749 2014
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.040 AlteredExpression group BEFREE Familial CCM type 1 (CCM1) is an autosomal dominant disease caused by mutations in the Krev Interaction Trapped 1 (KRIT1/CCM1) gene, and is characterized by multiple brain lesions whose number and size increase with age. 24401931 2014
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.040 Biomarker group BEFREE Tuberin binding was also reduced for 2 TSC1 stop mutants (hamartin and hamartin) that are present in brain lesions of TSC patients. 19918125 2009
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.040 AlteredExpression group BEFREE Immunocytochemical analysis of the TSC brain lesions confirmed the cell-specific activation of the mTOR pathway in cortical tubers, SENs and cerebellum, as well as differential cellular localization of hamartin and tuberin, the TSC1 and TSC2 gene products. 18410267 2008
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.040 Biomarker group BEFREE Anti-AQP4 antibody-positive MS patients fulfilling definite NMO criteria showed female preponderance, higher relapse rate, greater frequency of brain lesions and less frequent responses to interferon beta-1b than anti-AQP4 antibody-negative OSMS patients with LESCLs. 17439988 2007
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.040 GeneticVariation group BEFREE IFNB-1b should not be administered to demyelinating patients with genetic and clinical characteristics mimicking NMO such as HLA DPB1*0501 allele, longitudinally extensive spinal cord lesion, blindness and CSF pleocytosis even if they have symptomatic cerebral lesions as typically seen in MS. 17125797 2007
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.040 GeneticVariation group BEFREE Histopathologic similarities between MCDs and dysplastic brain lesions in the autosomal inherited neurocutaneous phacomatosis tuberous sclerosis (TSC), which affects the TSC1 and/or TSC2 genes, suggest common pathogenetic mechanisms. 16042315 2005
Entrez Id: 4137
Gene Symbol: MAPT
MAPT
0.040 Biomarker group BEFREE Abnormal aggregates of tau protein characterize the brain lesions of FTDP-17 patients and ubiquitin inclusions have been found in FTD with motor neuron disease linked to chromosome 9. 14503643 2003
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.040 GeneticVariation group BEFREE An additional unrelated sporadic subject with brain lesions compatible with CCM as well as vascular skin findings suggesting the blue rubber bleb nevus (BRBN) syndrome has no mutation detected in the CCM1 gene. 11959162 2002
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE Furthermore, T cells with specificity for MBP were identified in the brain lesions of the patients. 9034723 1997
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt- T-cell clones are homologous to TCRs from other T-cells relevant to MS, including T-cells causing experimental allergic encephalomyelitis (EAE) and T-cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 7544077 1995
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE The TCR V gene usage and CDR3s of these MBP-reactive hprt-T cell clones are homologous to TCRs from other T cells relevant to MS, including T cells causing experimental allergic encephalomyelitis (EAE) and T cells found in brain lesions and in the cerebrospinal fluid (CSF) of MS patients. 8040252 1994
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.040 Biomarker group BEFREE Selection for T-cell receptor V beta-D beta-J beta gene rearrangements with specificity for a myelin basic protein peptide in brain lesions of multiple sclerosis. 7680433 1993
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.030 AlteredExpression group BEFREE Multivariable analyses were adjusted for pretreatment ECOG PS, age, sex, race, smoking status, histology, count of prior treatments, PDL1 expression, serum LDH levels, and the presence of liver, lung, or brain lesions. 31735362 2020