Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5347
Gene Symbol: PLK1
PLK1
0.010 Biomarker disease BEFREE Inhibition of PLK1 by capped-dose volasertib exerts substantial efficacy in MDS and sAML while sparing healthy haematopoiesis. 31758597 2020
Entrez Id: 10273
Gene Symbol: STUB1
STUB1
0.010 Biomarker disease BEFREE ICUS, IDUS, CHIP and CCUS: Diagnostic Criteria, Separation from MDS and Clinical Implications. 29860246 2019
Entrez Id: 9242
Gene Symbol: MSC
MSC
0.010 Biomarker disease BEFREE MDS-MSCs that fail to respond to hypomethylating therapy are associated with patients with rapid adverse disease transformation and this further suggests that MDS-MSCs may be an integral part of disease progression and have prognostic value as well as potential as a therapeutic target. 30575819 2019
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.010 AlteredExpression disease BEFREE Myeloid maturation potentiates STAT3-mediated atypical IFN-γ signaling and upregulation of PD-1 ligands in AML and MDS. 31406210 2019
Entrez Id: 344875
Gene Symbol: COL6A4P1
COL6A4P1
0.010 Biomarker disease BEFREE This study included patients with IPSS lower-risk MDS from the DRAMA (An Observational Study for Dacogen Long-Term Treatment in Patients With Myelodysplastic Syndrome; NCT01400633) and DIVA (A Study for Dacogen Treatment in Patients With Myelodysplastic Syndrome; NCT01041846) studies, which were prospective observational studies on the efficacy and safety of decitabine treatment in patients with MDS. 31375393 2019
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.010 AlteredExpression disease BEFREE MDS patients with high (≥median) TCF4 mRNA expression had higher hemoglobin (Hb) levels than MDS patients with low TCF4 expression (mean 9.0 vs. 8.55 g/dL, p = 0.02). 30315825 2019
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.010 Biomarker disease BEFREE MMP9 inhibition increases erythropoiesis in RPS14-deficient del(5q) MDS models through suppression of TGF-β pathways. 31540902 2019
Entrez Id: 6596
Gene Symbol: HLTF
HLTF
0.010 GeneticVariation disease BEFREE A germline HLTF mutation in familial MDS induces DNA damage accumulation through impaired PCNA polyubiquitination. 30696947 2019
Entrez Id: 7490
Gene Symbol: WT1
WT1
0.010 AlteredExpression disease BEFREE <b>Objectives:</b> To evaluate the value of Wilms' tumor 1 mRNA (<i>WT1</i>) expression in the differential diagnosis of childhood myelodysplastic syndrome (MDS) and aplastic anemia (AA). 31210595 2019
Entrez Id: 2321
Gene Symbol: FLT1
FLT1
0.010 GeneticVariation disease BEFREE <sup>18</sup>F-FLT PET and DWI were unable to predict the progression to leukemia for both MDS and hypo-MDS patients. 30771115 2019
Entrez Id: 11200
Gene Symbol: CHEK2
CHEK2
0.010 Biomarker disease BEFREE In CHEK2-positive MDS patients, two times higher frequency of aberrant karyotypes than in CHEK2-negative patients was found (71% vs. 37%, p = 0.015). 29902706 2018
Entrez Id: 9700
Gene Symbol: ESPL1
ESPL1
0.010 AlteredExpression disease BEFREE Increased separase activity and occurrence of centrosome aberrations concur with transformation of MDS. 29370237 2018
Entrez Id: 7057
Gene Symbol: THBS1
THBS1
0.010 AlteredExpression disease BEFREE MDS-MF showed increased expression of thrombospondin 1 (THBS1), TIMP metallopeptidase inhibitor 1 (TIMP1), transforming growth factor beta 1 (TGFB1), matrix metallopeptidases 2 and 14 (MMP2, MMP14), SMAD family members 3 and 4 (SMAD3, SMAD4), and miR-146b. 29961094 2018
Entrez Id: 4493
Gene Symbol: MT1E
MT1E
0.010 Biomarker disease BEFREE Note that 100 mg daily was selected as the RP2D for glasdegib in combination with standard chemotherapies in the absence of an estimated MTD in this setting.<b>Conclusions:</b> Treatment with glasdegib in combination with standard chemotherapy was generally well-tolerated and consistent with prior findings, warranting further evaluation of glasdegib-based combinations in patients with AML or high-risk MDS.<i></i>. 29463550 2018
Entrez Id: 1523
Gene Symbol: CUX1
CUX1
0.010 Biomarker disease BEFREE Gene dosage effect of CUX1 in a murine model disrupts HSC homeostasis and controls the severity and mortality of MDS. 29592892 2018
Entrez Id: 1485
Gene Symbol: CTAG1B
CTAG1B
0.010 Biomarker disease BEFREE We hypothesized that vaccinating against NY-ESO-1 in patients with MDS receiving decitabine would capitalize upon induced NY-ESO-1 expression in malignant myeloid cells to provoke an NY-ESO-1-specific MDS-directed cytotoxic T-cell immune response.<b>Experimental Design:</b> In a phase I study, 9 patients with MDS received an HLA-unrestricted NY-ESO-1 vaccine (CDX-1401 + poly-ICLC) in a nonoverlapping schedule every four weeks with standard-dose decitabine.<b>Results:</b> Analysis of samples serially obtained from the 7 patients who reached the end of the study demonstrated induction of <i>NY-ESO-1</i> expression in 7 of 7 patients and NY-ESO-1-specific CD4<sup>+</sup> and CD8<sup>+</sup> T-lymphocyte responses in 6 of 7 and 4 of 7 of the vaccinated patients, respectively. 28947565 2018
Entrez Id: 3091
Gene Symbol: HIF1A
HIF1A
0.010 Biomarker disease BEFREE Inhibition of HIF1α Signaling: A Grand Slam for MDS Therapy? 30385524 2018
Entrez Id: 9429
Gene Symbol: ABCG2
ABCG2
0.010 AlteredExpression disease BEFREE High expression of ABCG2 induced by EZH2 disruption has pivotal roles in MDS pathogenesis. 28720764 2018
Entrez Id: 2146
Gene Symbol: EZH2
EZH2
0.010 AlteredExpression disease BEFREE High expression of ABCG2 induced by EZH2 disruption has pivotal roles in MDS pathogenesis. 28720764 2018
Entrez Id: 3559
Gene Symbol: IL2RA
IL2RA
0.010 AlteredExpression disease BEFREE CD25 was over-expressed on HSC in MDS patients, especially in high-risk MDS patients. 29407181 2018
Entrez Id: 3669
Gene Symbol: ISG20
ISG20
0.010 AlteredExpression disease BEFREE CD25 was over-expressed on HSC in MDS patients, especially in high-risk MDS patients. 29407181 2018
Entrez Id: 246100
Gene Symbol: CTAG1A
CTAG1A
0.010 Biomarker disease BEFREE We hypothesized that vaccinating against NY-ESO-1 in patients with MDS receiving decitabine would capitalize upon induced NY-ESO-1 expression in malignant myeloid cells to provoke an NY-ESO-1-specific MDS-directed cytotoxic T-cell immune response.<b>Experimental Design:</b> In a phase I study, 9 patients with MDS received an HLA-unrestricted NY-ESO-1 vaccine (CDX-1401 + poly-ICLC) in a nonoverlapping schedule every four weeks with standard-dose decitabine.<b>Results:</b> Analysis of samples serially obtained from the 7 patients who reached the end of the study demonstrated induction of <i>NY-ESO-1</i> expression in 7 of 7 patients and NY-ESO-1-specific CD4<sup>+</sup> and CD8<sup>+</sup> T-lymphocyte responses in 6 of 7 and 4 of 7 of the vaccinated patients, respectively. 28947565 2018
Entrez Id: 5909
Gene Symbol: RAP1GAP
RAP1GAP
0.010 AlteredExpression disease BEFREE Methylation level of Rap1GAP and the clinical significance in MDS. 30546468 2018
Entrez Id: 945
Gene Symbol: CD33
CD33
0.010 Biomarker disease BEFREE Novel therapeutic approach to improve hematopoiesis in low risk MDS by targeting MDSCs with the Fc-engineered CD33 antibody BI 836858. 28096534 2017
Entrez Id: 23556
Gene Symbol: PIGN
PIGN
0.010 AlteredExpression disease BEFREE A randomForest analysis of the gene expression array data from 55 MDS patients (GSE4619) demonstrated a significant (p = 0.0007) correlation (Pearson r =-0.4068) between GPI-anchor biosynthesis gene expression and genomic instability, in which PIGN, a gene participating in GPI-AP biosynthesis, was ranked as the third most important in predicting risk of MDS progression. 28187452 2017