Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 9158
Gene Symbol: FIBP
FIBP
0.100 GeneticVariation group CLINVAR
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.100 CausalMutation group CLINVAR
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.100 CausalMutation group CLINVAR
Entrez Id: 8036
Gene Symbol: SHOC2
SHOC2
0.100 CausalMutation group CLINVAR
Entrez Id: 8021
Gene Symbol: NUP214
NUP214
0.100 GeneticVariation group CLINVAR
Entrez Id: 6834
Gene Symbol: SURF1
SURF1
0.020 GeneticVariation group BEFREE Facial dysmorphism in Leigh syndrome with SURF-1 mutation and COX deficiency. 16765830 2006
Entrez Id: 6311
Gene Symbol: ATXN2
ATXN2
0.010 GeneticVariation group BEFREE Facial dysmorphism associated with developmental delay and retinitis pigmentosa in early childhood should prompt a careful family investigation for ataxia and study of ATX2. 21975856 2012
Entrez Id: 7403
Gene Symbol: KDM6A
KDM6A
0.020 GeneticVariation group BEFREE Facial dysmorphism with KDM6A mutations is variable and diagnosis on facial gestalt alone may be difficult in some patients. 24527667 2015
Entrez Id: 3258
Gene Symbol: HPT
HPT
0.010 Biomarker group BEFREE Hypoparathyroidism-retardation-dysmorphism (HRD; Sanjad-Sakati Syndrome; Online Mendelian Inheritance in Man [OMIM] #241410) is a rare recessive syndrome predominantly seen on the Arabian Peninsula and characterized by congenital hypoparathyroidism, intrauterine growth retardation, mental retardation, seizures, and a typical facial dysmorphism (prominent forehead, deep-set eyes, and abnormal external ears).(1,2) To date, the same homozygous deletion in TBCE (155-166del) has been reported in all Saudi Arabian patients with HRD(1) as well as in all Saudi Arabian patients with Kenny-Caffey syndrome (OMIM #244460),(1) a syndrome with a phenotype that resembles that of HRD but is characterized by the presence of normal intelligence, late closure of the anterior fontanelle, macrocephaly, and postnatal (rather than prenatal) growth retardation. 17257873 2007
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.010 GeneticVariation group BEFREE Fibroblast growth factor receptor 3 (FGFR3) mutation in a verrucous epidermal naevus associated with mild facial dysmorphism. 17441958 2007
Entrez Id: 1789
Gene Symbol: DNMT3B
DNMT3B
0.010 Biomarker group BEFREE ICF should be suspected in children with facial dysmorphism who present with recurrent infections especially in highly inbred populations. 21120685 2011
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.010 GeneticVariation group BEFREE BMP4 deletions were detected in two patients: a patient affected with SHORT syndrome and a patient with anterior segment anomalies along with craniofacial dysmorphism and cognitive impairment. 21340693 2011
Entrez Id: 92579
Gene Symbol: G6PC3
G6PC3
0.010 GeneticVariation group BEFREE G6PC3 mutations may be associated with hydronephrosis or facial dysmorphism. 22050868 2012
Entrez Id: 8905
Gene Symbol: AP1S2
AP1S2
0.010 GeneticVariation group BEFREE MRXS5 or Pettigrew syndrome was described 20 years ago in a four generation family including nine affected individuals presenting with facial dysmorphism, intellectual disability, Dandy-Walker malformation and inconstant choreoathetosis. 23756445 2014
Entrez Id: 54499
Gene Symbol: TMCO1
TMCO1
0.030 GeneticVariation group BEFREE TMCO1 mutations cause craniofacial dysmorphism, skeletal anomalies characterized by multiple malformations of the vertebrae and ribs, and intellectual disability (MIM#614132). 24424126 2014
Entrez Id: 9342
Gene Symbol: SNAP29
SNAP29
0.010 Biomarker group BEFREE CEDNIK (CErebral Dysgenesis, Neuropathy, Ichthyosis, and Keratoderma) syndrome is a neuroichthyotic syndrome characterized by a constellation of clinical features including severe developmental retardation, microcephaly, and facial dysmorphism. 30793783 2019
Entrez Id: 2316
Gene Symbol: FLNA
FLNA
0.020 GeneticVariation group BEFREE A filamin A splice mutation resulting in a syndrome of facial dysmorphism, periventricular nodular heterotopia, and severe constipation reminiscent of cerebro-fronto-facial syndrome. 16299064 2006
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.010 AlteredExpression group BEFREE A novel microduplication syndrome involving various-sized contiguous duplications in 17p13.3 has recently been described, suggesting that increased copy number of genes in 17p13.3, particularly PAFAH1B1, is associated with clinical features including facial dysmorphism, developmental delay, and autism spectrum disorder. 21901111 2011
Entrez Id: 8925
Gene Symbol: HERC1
HERC1
0.010 GeneticVariation group BEFREE A splice site mutation in HERC1 leads to syndromic intellectual disability with macrocephaly and facial dysmorphism: Further delineation of the phenotypic spectrum. 27108999 2016
Entrez Id: 5308
Gene Symbol: PITX2
PITX2
0.030 Biomarker group BEFREE Affected homozygous zebrafish demonstrated congenital defects consistent with the range of PITX2-associated human phenotypes: abnormal development of the cornea, iris and iridocorneal angle; corneal dermoids; and craniofacial dysmorphism. 29506241 2018
Entrez Id: 8231
Gene Symbol: CND
CND
0.010 Biomarker group BEFREE Affected homozygous zebrafish demonstrated congenital defects consistent with the range of PITX2-associated human phenotypes: abnormal development of the cornea, iris and iridocorneal angle; corneal dermoids; and craniofacial dysmorphism. 29506241 2018
Entrez Id: 51114
Gene Symbol: ZDHHC9
ZDHHC9
0.010 GeneticVariation group BEFREE Although initial reports of families with ZDHHC9 pathogenic variants suggested a nonsyndromic XLID, more recent reports suggest a syndromic phenotype with facial dysmorphism. 29681091 2018
Entrez Id: 80326
Gene Symbol: WNT10A
WNT10A
0.010 GeneticVariation group BEFREE Although no clinical differences between patients carrying EDA1, EDAR, or EDARADD mutations could be identified, patients harboring WNT10A mutations displayed distinctive clinical features (marked dental phenotype, no facial dysmorphism), helping to decide which gene should be first investigated in HED/EDA. 20979233 2011
Entrez Id: 7546
Gene Symbol: ZIC2
ZIC2
0.010 GeneticVariation group BEFREE Although severe facial anomalies are common in HPE, all of the patients with ZIC2 mutations had relatively normal faces, suggesting that ZIC2 mutations represent a large proportion of HPE cases without facial malformation. 11285244 2001
Entrez Id: 50485
Gene Symbol: SMARCAL1
SMARCAL1
0.010 Biomarker group BEFREE Autosomal-recessive Schimke immuno-osseous dysplasia (SIOD) characterized by spondyloepiphyseal dysplasia, focal-segmental glomerulosclerosis (FSGS), T-cell immunodeficiency and facial dysmorphism is caused by defects in the SMARCAL1 gene. 16237566 2005