Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE The Say-Barber-Biesecker-Young-Simpson variant of Ohdo syndrome (SBBYSS) (MIM# 603736) and genitopatellar syndrome (GPS) (MIM#606170) are allelic diseases caused by KAT6B mutation. 27696664 2017
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE We detected a de novo truncating variant within exon 7 of KAT6B in a 8-year-old female who presented with mild intellectual disability, facial dysmorphisms highly consistent with SBBYSS, and skeletal anomalies including exostosis, that are usually considered component manifestations of GPS. 29226580 2018
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE Using an exome-sequencing approach, we identified de novo mutations of KAT6B in five individuals with GPS; a single nonsense variant and three frameshift indels, including a 4 bp deletion observed in two cases. 22265017 2012
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE KAT6B sequence variants have been identified previously in both patients with the Say-Barber-Biesecker type of blepharophimosis mental retardation syndromes (SBBS) and in the more severe genitopatellar syndrome (GPS). 25424711 2015
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE We suggest that mutations in mid-exon 18 corresponding to the C-terminal end of the acidic (Asp/Glu-rich) domain of KAT6B may have more variable expressivity leading to GPS, SBBYSS or combined phenotypes, in contrast to defects in other regions of the gene which contribute more specifically to either GPS or SBBYSS. 26370006 2015
Entrez Id: 23522
Gene Symbol: KAT6B
KAT6B
0.090 GeneticVariation disease BEFREE The phenotypic spectrum of KAT6B mutations has been expanding since identification of KAT6B mutations in genitopatellar syndrome (GPS) and Say Barber Biesecker Young Simpson (SBBYS) syndrome patients. 28696035 2017
Entrez Id: 8856
Gene Symbol: NR1I2
NR1I2
0.020 Biomarker disease BEFREE Marked emperipolesis, specific defect of MK alpha-granule content and defect of PAR1-mediated platelet responses are present in all GPS patients that we could study in detail. 25806575 2015
Entrez Id: 8856
Gene Symbol: NR1I2
NR1I2
0.020 Biomarker disease BEFREE It also better characterizes the pathogenesis of defective platelet responses to thrombin, and raises interesting questions on the correlation between abnormal PAR function and the lack of alpha-granule content in GPS. 17137471 2007
Entrez Id: 65065
Gene Symbol: NBEAL1
NBEAL1
0.010 GeneticVariation disease BEFREE We show that GPS-causing mutations in its BEACH domain have profound and possible effects on the interaction with Dock7 and Vac14, respectively. 29187380 2018
Entrez Id: 2873
Gene Symbol: GPS1
GPS1
0.010 Biomarker disease BEFREE For the assessment of systemic inflammatory response using the GPS, patients were classified into three groups: Patients with normal serum albumin (<3.5 g/dl) and normal serum C-reactive protein (CRP) (≤1.0 mg/dl) were classified as GPS 0 (n=76), those with low serum albumin (<3.5 g/dl) or elevated serum CRP (>1.0 mg/dl) were classified as GPS 1 (n=58), and those with low serum albumin (<3.5 g/dl) and elevated serum CRP (>1.0 mg/dl) were classified as GPS 2 (n=10). 28693167 2017
Entrez Id: 4627
Gene Symbol: MYH9
MYH9
0.010 Biomarker disease BEFREE The diagnostic algorithm recognized: 4 homozygous and 4 heterozygous Bernard-Soulier syndromes, 11 MYH9-related diseases, one von WillebrandOs disease type 2B, one gray platelet syndrome and one X-linked thrombocytopenia with thalassemia. 15477207 2004
Entrez Id: 6857
Gene Symbol: SYT1
SYT1
0.010 AlteredExpression disease BEFREE In addition, GPS treatment markedly suppressed the expression of phosphorylated (p)-ERK, nuclear factor (NF)-κB p65 and cyclin D1, and increased the synthesis of p-P38 and p-JNK protein expression, as evidenced by immunofluorescence and western blotting analyses. 28450921 2017
Entrez Id: 6403
Gene Symbol: SELP
SELP
0.010 GeneticVariation disease BEFREE Gray Platelet Syndrome (GPS) platelets also lack conventionally recognizable α-granules, although P-selectin containing structures are present. 28277061 2017
Entrez Id: 51206
Gene Symbol: GP6
GP6
0.010 Biomarker disease BEFREE Severe deficiency of glycoprotein VI in a patient with gray platelet syndrome. 15010364 2004
Entrez Id: 64689
Gene Symbol: GORASP1
GORASP1
0.010 AlteredExpression disease BEFREE In addition, GPS treatment markedly suppressed the expression of phosphorylated (p)-ERK, nuclear factor (NF)-κB p65 and cyclin D1, and increased the synthesis of p-P38 and p-JNK protein expression, as evidenced by immunofluorescence and western blotting analyses. 28450921 2017
Entrez Id: 3239
Gene Symbol: HOXD13
HOXD13
0.010 Biomarker disease BEFREE This prompted reanalysis of the 5'-untranslated structure of the human RABGGTA gene in normal individuals and in patients with deficiencies of platelet-dense granules (alphadelta-SPD), alpha granules (alpha-SPD or gray platelet syndrome, GPS) or alpha plus dense granules (alphadelta-SPD). 11136552 2000
Entrez Id: 5196
Gene Symbol: PF4
PF4
0.010 Biomarker disease BEFREE Reduced immunolabeling for platelet factor 4 together with normal immunolabeling for CD63 in MKs of two patients demonstrated that GPS MKs display an alpha granule-specific defect. 25806575 2015
Entrez Id: 2516
Gene Symbol: NR5A1
NR5A1
0.010 Biomarker disease BEFREE This suggests that the locus 9q33-9q34 can be excluded for GPS and that the presented case is unique in its combination of GPS and NPS features caused by a microdeletion associated with loss of function of LMX1B and NR5A1. 17431898 2007
Entrez Id: 7412
Gene Symbol: VCAM1
VCAM1
0.010 AlteredExpression disease BEFREE In this study, we found that GPS significantly reversed the downregulation of TGR5 and inhibited the overproduction of fibronectin (FN), transforming growth factor β1 (TGF-β1), intercellular adhesion molecule-1 (ICAM-1) and vascular adhesion molecule-1 (VCAM-1) in glomerular mesangial cells (GMCs) exposed to high glucose (HG). 31759089 2020
Entrez Id: 967
Gene Symbol: CD63
CD63
0.010 Biomarker disease BEFREE Reduced immunolabeling for platelet factor 4 together with normal immunolabeling for CD63 in MKs of two patients demonstrated that GPS MKs display an alpha granule-specific defect. 25806575 2015
Entrez Id: 5599
Gene Symbol: MAPK8
MAPK8
0.010 AlteredExpression disease BEFREE In addition, GPS treatment markedly suppressed the expression of phosphorylated (p)-ERK, nuclear factor (NF)-κB p65 and cyclin D1, and increased the synthesis of p-P38 and p-JNK protein expression, as evidenced by immunofluorescence and western blotting analyses. 28450921 2017
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.010 AlteredExpression disease BEFREE In addition, GPS treatment markedly suppressed the expression of phosphorylated (p)-ERK, nuclear factor (NF)-κB p65 and cyclin D1, and increased the synthesis of p-P38 and p-JNK protein expression, as evidenced by immunofluorescence and western blotting analyses. 28450921 2017
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.010 Biomarker disease BEFREE Apart from platelet α-granule deficiency and reduced neutrophil granularity, also monocyte granularity was reduced in Nbeal2<sup>-/-</sup> mice, whereas plasma levels of MPO (myeloperoxidase), elastase, NGAL (neutrophil gelatinase-associated lipocalin), and MMP-9 (matrix metalloproteinase 9), and leukocyte CD11b expression were increased. 29930006 2018
Entrez Id: 55697
Gene Symbol: VAC14
VAC14
0.010 GeneticVariation disease BEFREE We show that GPS-causing mutations in its BEACH domain have profound and possible effects on the interaction with Dock7 and Vac14, respectively. 29187380 2018
Entrez Id: 145624
Gene Symbol: PWAR1
PWAR1
0.010 Biomarker disease BEFREE Marked emperipolesis, specific defect of MK alpha-granule content and defect of PAR1-mediated platelet responses are present in all GPS patients that we could study in detail. 25806575 2015