Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4360
Gene Symbol: MRC1
MRC1
0.010 GeneticVariation group BEFREE Frequencies of malformation in BRCA2 and MMR mutated families were similar to families without a cancer syndrome. 30785647 2020
Entrez Id: 5139
Gene Symbol: PDE3A
PDE3A
0.010 GeneticVariation group BEFREE Our study not only adds to the spectrum of PDE3A mutations in the Chinese population and extends the phenotype of HTNB patients to include vertebral malformation but also improves the awareness of pathogenesis in HTNB patients. 31549136 2020
Entrez Id: 2731
Gene Symbol: GLDC
GLDC
0.010 Biomarker group BEFREE Here, we showed that ventriculomegaly in Gldc-deficient mice is preceded by stenosis of the Sylvian aqueduct and malformation or absence of the sub-commissural organ and pineal gland. 31794432 2020
Entrez Id: 675
Gene Symbol: BRCA2
BRCA2
0.010 Biomarker group BEFREE Frequencies of malformation in BRCA2 and MMR mutated families were similar to families without a cancer syndrome. 30785647 2020
Entrez Id: 79805
Gene Symbol: VASH2
VASH2
0.010 Biomarker group BEFREE Microinjection of miR-181a-5p mimics and inhibitors led to abnormal expressions (20-50%) of two key target genes (pax2a and vash2) by WISH, and increased malformation percentages (18-45%) by IOD analysis. 30784759 2019
Entrez Id: 10413
Gene Symbol: YAP1
YAP1
0.010 AlteredExpression group BEFREE Tissue specific knockout of VGLL4 in different cell lineages revealed that only loss of VGLL4 in endothelial cell lineage led to valve malformation with expanded expression of YAP targets. 30789911 2019
Entrez Id: 26033
Gene Symbol: ATRNL1
ATRNL1
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 3549
Gene Symbol: IHH
IHH
0.010 GeneticVariation group BEFREE Brachydactyly type A1 (BDA1, OMIM 112500) is a rare inherited malformation characterized primarily by shortness or absence of middle bones of fingers and toes. 30651074 2019
Entrez Id: 84680
Gene Symbol: ACCS
ACCS
0.010 Biomarker group BEFREE Cyanide produced with ethylene by ACS and its incomplete detoxification by β-CAS in mango inflorescence leads to malformation. 31797981 2019
Entrez Id: 25923
Gene Symbol: ATL3
ATL3
0.010 GeneticVariation group BEFREE ATL3 Y192C delays ER-export by reducing the number of ER exit sites, reduces autophagy, fragments the Golgi and causes malformation of the nucleus. 30666337 2019
Entrez Id: 55902
Gene Symbol: ACSS2
ACSS2
0.010 Biomarker group BEFREE Cyanide produced with ethylene by ACS and its incomplete detoxification by β-CAS in mango inflorescence leads to malformation. 31797981 2019
Entrez Id: 80150
Gene Symbol: ASRGL1
ASRGL1
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.010 Biomarker group BEFREE Genetically inactivating 1 allele of either Ednra or Bmp4 significantly reduced the penetrance of maxillary malformation in both Six1 <sup>-/-</sup> and Six1 <sup>-/-</sup> Six2 <sup>+/-</sup> embryos, indicating that Six1 and Six2 regulate both endothelin and bone morphogenetic protein-4 signaling pathways to pattern the facial structures. 30905259 2019
Entrez Id: 4780
Gene Symbol: NFE2L2
NFE2L2
0.010 Biomarker group BEFREE After knocking down Nrf2 in zebrafish embryos, the rates of mortality and malformation were markedly increased and the hatching rate was significantly decreased. 31022495 2019
Entrez Id: 470
Gene Symbol: ATHS
ATHS
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.010 Biomarker group BEFREE While ATXN7 depletion in flies led to gross retinal degeneration, in zebrafish, it primarily results in ocular coloboma, a structural malformation responsible for pediatric visual impairment in humans. 30445451 2019
Entrez Id: 6477
Gene Symbol: SIAH1
SIAH1
0.010 GeneticVariation group BEFREE Remarkably, coexpression of Siah1 with Akt3-WT restricted disorganization of neural development is caused by Akt3 overexpression, whereas forced expression of Siah1 with the Akt3-E17K mutant fails to cope with malformation of neural development. 31471318 2019
Entrez Id: 5903
Gene Symbol: RANBP2
RANBP2
0.010 GeneticVariation group BEFREE Rescue experiments with wildtype and disease-related mutant BICD2 constructs revealed that a point-mutation in the RAB6/RANBP2-binding-domain, associated with cortical malformation in patients, fails to restore proper cortical neuron migration. 31655624 2019
Entrez Id: 27295
Gene Symbol: PDLIM3
PDLIM3
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 23299
Gene Symbol: BICD2
BICD2
0.010 GeneticVariation group BEFREE Rescue experiments with wildtype and disease-related mutant BICD2 constructs revealed that a point-mutation in the RAB6/RANBP2-binding-domain, associated with cortical malformation in patients, fails to restore proper cortical neuron migration. 31655624 2019
Entrez Id: 1896
Gene Symbol: EDA
EDA
0.010 GeneticVariation group BEFREE In X-linked hypohidrotic ectodermal dysplasia (XLHED), dysfunction of ectodysplasin A1 (EDA1) due to EDA mutations results in malformation of hair, teeth, and sweat glands. 30394555 2019
Entrez Id: 22824
Gene Symbol: HSPA4L
HSPA4L
0.010 Biomarker group BEFREE On the basis of a screen that implicated the heat shock protein Hspa4l in spermatogenesis, we generated mice deficient in Hspa4l (<i>Hspa4l</i>-null mice), which showed male infertility and the malformation of sperm heads. 30914484 2019
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.010 Biomarker group BEFREE SC-specific phosphatase and tensin homolog (Pten) inactivation and epidermal growth factor receptor (EGFR) overexpression (Dhh-Cre; Cnp-EGFR; Pten<sup>flox/flox</sup> or DET) mice were used and NMJ malformation was observed in these mice. 31122699 2019
Entrez Id: 3066
Gene Symbol: HDAC2
HDAC2
0.010 AlteredExpression group BEFREE Developmental stage-specific depletion of both HDAC1 and HDAC2 in radial glial progenitors results in mispositioning of IPs at the ventricular surface, where they divide and differentiate into neurons, thereby leading to the cortical malformation. 30709655 2019
Entrez Id: 5915
Gene Symbol: RARB
RARB
0.010 GeneticVariation group BEFREE This case further delineates the pattern of malformation associated with RARB variants. 30790422 2019