Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 Biomarker disease BEFREE Respected were the beneficial effects obtained with free peptides or peptides with different carriers; EGF, FGF, VEGF, and BPC 157, their presentation along with injuries, and a healing commonality, providing their implementation in both gastrointestinal ulcer healing and tendon, ligament, muscle and bone healing. 29998800 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 AlteredExpression disease BEFREE Diabetic patients with non-healing ulcers have a reduced expression of VEGF. 29178246 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 AlteredExpression disease BEFREE Treatment of rats with misoprostol, a PGE1 analog capable of activating EP receptors, enhanced phosphorylation of CREB, stimulated VEGF expression and angiogenesis, and accelerated esophageal ulcer healing. 25059824 2014
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 AlteredExpression disease BEFREE The study found that HGF, HGFR, EGF, VEGF, and, COX-2 are activated in the injured mucosa of EE patients; their activation might be involved in mucosal repair and ulcer healing of EE. 18674742 2008
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 Biomarker disease BEFREE Local, single injection of plasmid-DNA encoding vascular endothelial growth factor (VEGF) was shown to stimulate the ulcer healing in the rat. 15638736 2005
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 AlteredExpression disease BEFREE The expression of HIF-1alpha, endothelin-1, inducible nitric oxide synthase, and vascular endothelial growth factor mRNA was highest during the active stage of ulcer healing, and endothelin-1, vascular endothelial growth factor protein levels and nitric oxide were higher during the healing stage. 15838334 2004
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 Biomarker disease BEFREE These data suggest that VEGF may play a role in angiogenesis in the process of gastric ulcer healing. 9177300 1997
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.040 Biomarker disease BEFREE Enhancement of Gastric Ulcer Healing and Angiogenesis by Hepatocyte Growth Factor Gene Mediated by Attenuated Salmonella in Rats. 28049228 2017
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.040 Biomarker disease BEFREE Current study was designed to understand the gastric ulcer healing mechanism of rhamnogalacturonan-I type pectic polysaccharide of black cumin (BCPP) utilizing acetic acid induced gastric ulcers in rats.BCPP fed groups at 200mg/kg b.w. for 10days showed up to 85% healing of gastric ulcers with modulation of key molecular events involved in ulcer healing process such as increase in gastric mucin content, cyclooxygenase-2 (Cox-2) and prostaglandin E<sub>2</sub> (PGE<sub>2</sub>). 28322956 2017
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.040 Biomarker disease BEFREE Hepatocyte growth factor (HGF) optimizes oral traumatic ulcer healing of mice by reducing inflammation. 28830652 2017
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.040 GeneticVariation disease BEFREE Complete ulcer healing at 12 months occurred in 31% of the HGF group and 0% of the placebo (P = .28) There was no difference in major amputation of the treated limb (HGF 29% vs placebo 33%) or mortality at 12 months (HGF 19% vs placebo 17%) between groups. 21146749 2010
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.040 AlteredExpression disease BEFREE The study found that HGF, HGFR, EGF, VEGF, and, COX-2 are activated in the injured mucosa of EE patients; their activation might be involved in mucosal repair and ulcer healing of EE. 18674742 2008
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.040 Biomarker disease BEFREE We conclude that 1) HP infected gastric ulcer margin coexpresses gastrin, its receptors (CCK(B)-R), and COX-2; 2) HP infection may be implicated in gastric ulceration via increased release of gastrin that could be responsible for the overexpression of COX-2 that in turn could help ulcer healing through the stimulation of mucosal cell growth, restoration of the glandular structure and angiogenesis in the ulcer area and 3) gastrin produced in HP infected antral mucosa seems to be involved in the induction of COX-2 and PG production by this enzyme and this may contribute to the ulcer healing. 11519793 2001
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.040 Biomarker disease BEFREE Cyclo-oxygenase-2 (COX-2) is the inducible enzyme in the gastric mucosa responsible for prostaglandin production during inflammation and ulcer healing. 11686835 2001
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.040 Biomarker disease BEFREE These data suggest that HGF mediates specific tissue interactions between mesenchyme and epithelia during gastric ulcer healing. 9394725 1997
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 AlteredExpression disease BEFREE The ulcer healing activity was also associated with significant increases in gastric mucin content, collagen deposition, number of cells with positive marking for proliferating cell nuclear antigen (PCNA), and by changes in the expression of the inflammatory parameters tumor necrosis factor (TNF)-α, interleukin (IL)-1β and cyclooxygenase (COX)-2, as well as a decrease of metalloproteinases (MMP-9 and MMP-2) activity. 30991046 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 AlteredExpression disease BEFREE This study demonstrated that compared to CS alone, TNF-i improve disease activity and possess a higher ulcer healing effect and CS tapering effect with or without concomitant CS. 31228955 2019
Entrez Id: 1950
Gene Symbol: EGF
EGF
0.030 AlteredExpression disease BEFREE CO donor upregulated HGF, HGFr, VEGFR1, VEGFR2, TGF-β1, annexin-1 and maintained increased IGF-1, PDGFC and EGF expression at various time-intervals of ulcer healing. 30753813 2019
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 AlteredExpression disease BEFREE DFU rats treated with miR-217 inhibitors had decreased foot ulcer area and accelerated ulcer healing, with significantly reduced inflammatory factors (IL-1β, TNF-α and IL-6), as well as elevated HIF-1α and VEGF (all P < 0.05); meanwhile, they remarkably increased the MVD in foot dorsum wound tissues and the protein expressions of HIF-1α, VEGF, VEGFR2, eNOS, MMP-2, and MMP-9 (all P < 0.05). 31079353 2019
Entrez Id: 1557
Gene Symbol: CYP2C19
CYP2C19
0.030 GeneticVariation disease BEFREE The CYP2C19 genotype has recently been found to have an impact on peptic ulcer healing, H. pylori eradication and therapeutic efficacy of proton pump inhibitors. 30403784 2019
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 AlteredExpression disease BEFREE The ulcer healing activity was also associated with significant increases in gastric mucin content, collagen deposition, number of cells with positive marking for proliferating cell nuclear antigen (PCNA), and by changes in the expression of the inflammatory parameters tumor necrosis factor (TNF)-α, interleukin (IL)-1β and cyclooxygenase (COX)-2, as well as a decrease of metalloproteinases (MMP-9 and MMP-2) activity. 30991046 2019
Entrez Id: 1950
Gene Symbol: EGF
EGF
0.030 Biomarker disease BEFREE Bismuth also helps ulcer healing by acting as a barrier to the aggressive factors and increasing mucosal protective factors such as prostaglandin, epidermal growth factor, and bicarbonate secretion. 26808355 2018
Entrez Id: 1950
Gene Symbol: EGF
EGF
0.030 Biomarker disease BEFREE Respected were the beneficial effects obtained with free peptides or peptides with different carriers; EGF, FGF, VEGF, and BPC 157, their presentation along with injuries, and a healing commonality, providing their implementation in both gastrointestinal ulcer healing and tendon, ligament, muscle and bone healing. 29998800 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 Biomarker disease BEFREE Together, these data support the hypothesis that TNF plays a beneficial role in enhancing Wnt/β-catenin signaling during ulcer healing in IBD. 28747340 2017
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 Biomarker disease BEFREE A high matrix metalloproteinase-9/tissue inhibitor of metalloproteinase-1 (MMP9/TIMP1) ratio is associated with poor ulcer healing, yet how the ratio of MMP9/TIMP1 changes in diabetic foot ulcers (DFUs) with infection and how these changes may affect wound healing remain unclear. 28682675 2017