Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE Of the remaining 139 (52.3%) cases, 86 (62%) had follow-up Pap Tests, of which 57 (66.3%) were negative, 15 (17.4%) were ASC-US, 12 (15%) were low-grade squamous intraepithelial lesions, and 2 (2.3%) were high-grade squamous intraepithelial lesions; 53 (38.1%) were lost to follow-up. 17041955 2006
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE HPV 16 was found the most common HR-HPV type in ASC-US and LSIL whereas HPV 18 was the most common in HSIL. 30880699 2019
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE The distribution of Pap smear results was normal (4.7%), atypical squamous cells of uncertain significance (ASCUS) (42.1%), low-grade squamous intraepithelial lesion (26.8%), ASC-H (7.0%), and high-grade squamous intraepithelial lesion (HSIL) (19.5%). 24825374 2014
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE Furthermore, HPV was detected in 56% of ASC-US and 71% of ASC-H cases. 15086283 2004
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE Patients with LSIL-H and HSIL had similar infection rates for low-risk/intermediate-risk HPV genotypes, which were lower than those in LSIL or LSIL and ASC-H combined. 22648956 2012
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE Ten of the 15 cases were identified as atypical squamous cells - cannot exclude an HSIL (ASC-H) with secondary diagnosis of low-grade squamous intraepithelial lesion (LSIL), while five cases were identified as high-grade squamous intraepithelial lesion (HSIL), and a subsequent biopsy was recommended. 29154448 2018
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE Patients with LSIL-H and HSIL had similar infection rates for low-risk/intermediate-risk HPV genotypes, which were lower than those in LSIL or LSIL and ASC-H combined. 22648956 2012
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE Furthermore, HPV was detected in 56% of ASC-US and 71% of ASC-H cases. 15086283 2004
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE Ten of the 15 cases were identified as atypical squamous cells - cannot exclude an HSIL (ASC-H) with secondary diagnosis of low-grade squamous intraepithelial lesion (LSIL), while five cases were identified as high-grade squamous intraepithelial lesion (HSIL), and a subsequent biopsy was recommended. 29154448 2018
Entrez Id: 412
Gene Symbol: STS
STS
0.100 GeneticVariation phenotype BEFREE The distribution of Pap smear results was normal (4.7%), atypical squamous cells of uncertain significance (ASCUS) (42.1%), low-grade squamous intraepithelial lesion (26.8%), ASC-H (7.0%), and high-grade squamous intraepithelial lesion (HSIL) (19.5%). 24825374 2014
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE Of the remaining 139 (52.3%) cases, 86 (62%) had follow-up Pap Tests, of which 57 (66.3%) were negative, 15 (17.4%) were ASC-US, 12 (15%) were low-grade squamous intraepithelial lesions, and 2 (2.3%) were high-grade squamous intraepithelial lesions; 53 (38.1%) were lost to follow-up. 17041955 2006
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 GeneticVariation phenotype BEFREE HPV 16 was found the most common HR-HPV type in ASC-US and LSIL whereas HPV 18 was the most common in HSIL. 30880699 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 GeneticVariation phenotype BEFREE In this study we investigated the relationship between the development of either HSILs (high-grade squamous intraepithelial lesions) or invasive cancers of the uterine cervix and the p53 codon 72 polymorphisms consisting of arginine (Arg)- or proline (Pro)-encoded allele in Japanese populations. 12168100 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 GeneticVariation phenotype BEFREE Moreover, p53 arg/arg patients infected by an HPV16 prototype strain were associated with an increased risk of more severe lesions, while a significant relationship between the p53 arg/arg genotype in patients with T350G sequence variation and the risk of high-grade squamous intraepithelial lesions (HSILs) was revealed.<b>Conclusion.</b> The oncogenic potential of the virus is increased by the presence of the p53 arg/arg genotype in the Greek population in such a way that the specific protein interaction E6 (L83V)-p53 (Arg-72) can modify an individual's susceptibility to cervical disease. 28857739 2017
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 GeneticVariation phenotype BEFREE In total, 100 cases [97 high-grade squamous intraepithelial lesion (HSIL) and 3 invasive cancer] and 196 controls had complete demographic and clinical questionnaire data and data of analysis of XRCC1 polymorphism, whereas only 99 cases and 193 controls had complete data for p53 polymorphism. 15216398 2004
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.050 GeneticVariation phenotype BEFREE The results indicate that GSTM1 and GSTT1 polymorphism were not associated with HSIL, although a small increase in risk was observed for individuals who were GSTT1 null (OR = 1.4, 95% CI = 0.57-3.44). 16795085 2006
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.050 GeneticVariation phenotype BEFREE The 19 patients with high-grade squamous intraepithelial lesion had statistically higher frequency of null GSTT1 genotype than 9 with low-grade squamous intraepithelial lesion (LSIL) among the 67 patients with high-risk HPV (P = 0.024). 25697264 2015
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.050 GeneticVariation phenotype BEFREE Thirty-one patients with HSIL had also statistically higher frequency of null GSTT1 genotype than 28 with LSIL among 69 patients with high-risk HPV. 15721419 2005
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.050 GeneticVariation phenotype BEFREE The GSTT1 null genotype was also related to high-grade intraepithelial neoplasia (HSIL) and cervical cancer risk (OR = 1.30 and OR = 1.78, respectively, P < .05).The GSTM1 null variant caused cervical lesions, especially among HPV infection cases and among the Chinese and Indian populations. 31593112 2019
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.050 GeneticVariation phenotype BEFREE There was an increased odds ratio for null GSTT1 genotype in HSIL and SCC cases compared with controls among 191 patients with high-risk HPV. 21166882 2010
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.040 GeneticVariation phenotype BEFREE Depending on the end-point (histologic/cyto-logic), the sensitivity range of HPV testing for significant cervical disease (high-grade squamous intraepithelial lesion [SIL], adenocarcinoma in situ [ACIS], invasive carcinoma) was 83% with a specificity range of 78% to 82%, a positive predictive value of 57% to 61%, and a negative predictive value of 91% to 95%. 14750245 2004
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.040 GeneticVariation phenotype BEFREE A significant protective association was observed between the presence of the G(*)0103 allele and SIL and between the G0101/G0104 genotype and HSIL in the group of patients compared to control. 19407850 2009
Entrez Id: 57026
Gene Symbol: PDXP
PDXP
0.040 GeneticVariation phenotype BEFREE A prospective study was conducted on 205 patients who underwent conization for high-grade squamous intraepithelial lesion (CIN 2 or 3). 13678729 2003
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.040 GeneticVariation phenotype BEFREE AAV appears to interact with HPV to reduce SIL risk; relative to the HPV-/AAV+ exposure, the respective aORs for HSIL and HPV+/AAV-, HPV+/AAV+, and HPV-/AAV+ were 17.0, 6.9, and 3.5. 11263951 2001
Entrez Id: 6491
Gene Symbol: STIL
STIL
0.040 GeneticVariation phenotype BEFREE A significant protective association was observed between the presence of the G(*)0103 allele and SIL and between the G0101/G0104 genotype and HSIL in the group of patients compared to control. 19407850 2009