Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 Biomarker phenotype BEFREE Immunoreactivity for p53 was seen in 83% of the benign and low-grade squamous intraepithelial lesions (SILs), in 73% of the high-grade SILs, and in 86% of the infiltrating squamous carcinomas. 8244324 1993
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.010 AlteredExpression phenotype BEFREE Although preliminary, our observations lend support to the suggestion that the experimental model of transcriptional regulation and exclusion of either HPV E6/E7 or MCP-1 expression is especially pertinent to high-grade SIL, whereas in most SCCs, other environmental factors may influence this relationship. 8909236 1996
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.030 Biomarker phenotype BEFREE HLA DRB1*13 was associated with a decreased risk of HPV/LSIL (RR = 0.78; 95% CI = 0.51-1.2) and HSIL (RR = 0.63; 95% CI = 0.30-1.3). 9829713 1998
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
0.030 Biomarker phenotype BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713 1998
Entrez Id: 2775
Gene Symbol: GNAO1
GNAO1
0.010 Biomarker phenotype BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713 1998
Entrez Id: 3120
Gene Symbol: HLA-DQB2
HLA-DQB2
0.010 Biomarker phenotype BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713 1998
Entrez Id: 5111
Gene Symbol: PCNA
PCNA
0.010 Biomarker phenotype BEFREE Cyclin E staining was nuclear in distribution, and the frequency of positive staining, ie., moderate or strong intensity, was significantly higher (P < .001 for cyclin E staining vs. diagnosis) in all of the lesional epithelia (92.3, 51.6, and 50% of low-grade and high-grade SILs and carcinomas, respectively) compared with nonlesional epithelium (5.9%). 9872657 1998
Entrez Id: 2272
Gene Symbol: FHIT
FHIT
0.010 Biomarker phenotype BEFREE Moreover, absent or reduced Fhit protein is observed at a significantly higher frequency in HSILs associated with progression to invasive cancer than in HSILs with unknown risk for progression (P = 0.012). 10999736 2000
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.040 GeneticVariation phenotype BEFREE AAV appears to interact with HPV to reduce SIL risk; relative to the HPV-/AAV+ exposure, the respective aORs for HSIL and HPV+/AAV-, HPV+/AAV+, and HPV-/AAV+ were 17.0, 6.9, and 3.5. 11263951 2001
Entrez Id: 6491
Gene Symbol: STIL
STIL
0.040 GeneticVariation phenotype BEFREE AAV appears to interact with HPV to reduce SIL risk; relative to the HPV-/AAV+ exposure, the respective aORs for HSIL and HPV+/AAV-, HPV+/AAV+, and HPV-/AAV+ were 17.0, 6.9, and 3.5. 11263951 2001
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.100 Biomarker phenotype BEFREE Positive scores for Ki-67, cyclin E, and p16 were seen in 68.4%, 96.7%, and 100% of LSILs and 94.7%, 91.6%, and 100% of HSILs, respectively. 11420459 2001
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 Biomarker phenotype BEFREE Positive scores for Ki-67, cyclin E, and p16 were seen in 68.4%, 96.7%, and 100% of LSILs and 94.7%, 91.6%, and 100% of HSILs, respectively. 11420459 2001
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.030 GeneticVariation phenotype BEFREE Compared with women who were HPV negative, women with HLA-DRB1*1301 were associated with decreased risk for cancer/HSILs (odds ratio [OR], 0.4; 95% confidence interval [CI], 0.2-0.7) and for LSILs/HPV (OR, 0.6; 95% CI, 0.3-0.9). 11679920 2001
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
0.030 Biomarker phenotype BEFREE Women with both HLA-B*07 and HLA-DQB1*0302 had an 8.2-fold increased risk for cancer/HSILs (95% CI, 1.8-37.2) and a 5.3-fold increased risk for LSILs/HPV (95% CI, 1.2-23.7). 11679920 2001
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 AlteredExpression phenotype BEFREE We compared the clinical and histopathological findings, immunohistochemical expression of Ki-67 and p53 protein, and HPV typing of 5 cases of PIM with SM (n=9), HSIL (n=6), and PSC (n=4) to know the helpful features for the differential diagnosis. 11748359 2001
Entrez Id: 4313
Gene Symbol: MMP2
MMP2
0.010 AlteredExpression phenotype BEFREE MMP-2 expression, when focally observed in high-grade squamous intraepithelial lesions of the cervix, may indicate tumor areas with an increased risk for invasive growth. 11812078 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.090 GeneticVariation phenotype BEFREE In this study we investigated the relationship between the development of either HSILs (high-grade squamous intraepithelial lesions) or invasive cancers of the uterine cervix and the p53 codon 72 polymorphisms consisting of arginine (Arg)- or proline (Pro)-encoded allele in Japanese populations. 12168100 2002
Entrez Id: 412
Gene Symbol: STS
STS
0.100 Biomarker phenotype BEFREE The cumulative incidence for a Pap test interpreted as atypical squamous cells or more severe (>or= ASC) was 16.8% (95% confidence interval [CI] = 15.0-18.6%), 6.4% (95% CI = 5.2-7.6%) for low-grade squamous intraepithelial lesions or more severe, and 2.2% (95% CI = 1.5-2.9%) for high-grade squamous intraepithelial lesions or more severe. 12412168 2002
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.100 Biomarker phenotype BEFREE The cumulative incidence for a Pap test interpreted as atypical squamous cells or more severe (>or= ASC) was 16.8% (95% confidence interval [CI] = 15.0-18.6%), 6.4% (95% CI = 5.2-7.6%) for low-grade squamous intraepithelial lesions or more severe, and 2.2% (95% CI = 1.5-2.9%) for high-grade squamous intraepithelial lesions or more severe. 12412168 2002
Entrez Id: 57026
Gene Symbol: PDXP
PDXP
0.040 GeneticVariation phenotype BEFREE A prospective study was conducted on 205 patients who underwent conization for high-grade squamous intraepithelial lesion (CIN 2 or 3). 13678729 2003
Entrez Id: 3381
Gene Symbol: IBSP
IBSP
0.010 Biomarker phenotype BEFREE The abundance of BSP protein was significantly higher in invasive SCCs and high grade SILs than in normal cervix tissue samples and low grade SILs, which showed no or a low level of anti-BSP immunoreactivity. 14506948 2003
Entrez Id: 7337
Gene Symbol: UBE3A
UBE3A
0.010 AlteredExpression phenotype BEFREE These results suggest the possibility that degradation by HPV E6 is one of the causal roles for the progressive decrease of hScrib expression during the disease progression from low-grade squamous intraepithelial lesions to H-SIL, and a cooperative role of downregulation of hScrib mRNA expression and ubiquitin-mediated degradation of hScrib by E6 and E6AP led to the complete decrease of hScrib expression during the process of carcinogenesis from H-SIL to invasive cancer. 14710229 2004
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.040 GeneticVariation phenotype BEFREE Depending on the end-point (histologic/cyto-logic), the sensitivity range of HPV testing for significant cervical disease (high-grade squamous intraepithelial lesion [SIL], adenocarcinoma in situ [ACIS], invasive carcinoma) was 83% with a specificity range of 78% to 82%, a positive predictive value of 57% to 61%, and a negative predictive value of 91% to 95%. 14750245 2004
Entrez Id: 6491
Gene Symbol: STIL
STIL
0.040 GeneticVariation phenotype BEFREE Depending on the end-point (histologic/cyto-logic), the sensitivity range of HPV testing for significant cervical disease (high-grade squamous intraepithelial lesion [SIL], adenocarcinoma in situ [ACIS], invasive carcinoma) was 83% with a specificity range of 78% to 82%, a positive predictive value of 57% to 61%, and a negative predictive value of 91% to 95%. 14750245 2004
Entrez Id: 5682
Gene Symbol: PSMA1
PSMA1
0.010 Biomarker phenotype BEFREE Digene HC II test was used to identify HR- and/or low-risk (LR-)HPV infections in cervical swabs of 275 women attending our clinic for routine cytological screening and/or colposcopy because of an abnormal Pap smear comprising low-grade squamous intraepithelial lesions (LGSIL) and high-grade SIL (HGSIL). 14984955 2004