Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 594857
Gene Symbol: NPS
NPS
0.010 Biomarker disease BEFREE Importantly, in experiments using PTH (1-34) to enhance fracture healing, co-injection of NPS-R568 not only normalized the hypercalcemic side effects of intermittent PTH (1-34) treatment in mice but also produced synergistic osteoanabolic effects in calluses. 31498905 2020
Entrez Id: 81029
Gene Symbol: WNT5B
WNT5B
0.010 AlteredExpression disease BEFREE TLR4 knockout promoted fracture healing, reduced the number of osteoclasts, increased bone callus volume (BV) and callus mineralized volume fraction (BV/TV%) (P <  0.05), increased the maximum torque and torsional stiffness of callus (P <  0.05), reduced TNF-α, IL-1β and IL-6 expression (P <  0.01), and increased the expression levels of β-catenin, Wnt4, Wnt5B, PCNA and BMP-2 (P <  0.01). 31796334 2020
Entrez Id: 4087
Gene Symbol: SMAD2
SMAD2
0.010 PosttranslationalModification disease BEFREE Meanwhile, IFT80 deletion downregulated the TGF-β signaling pathway by inhibiting the expression of TGF-βI, TGF-βR, and phosphorylation of Smad2/3 in the fracture callus. 31643106 2020
Entrez Id: 54361
Gene Symbol: WNT4
WNT4
0.010 AlteredExpression disease BEFREE TLR4 knockout promoted fracture healing, reduced the number of osteoclasts, increased bone callus volume (BV) and callus mineralized volume fraction (BV/TV%) (P <  0.05), increased the maximum torque and torsional stiffness of callus (P <  0.05), reduced TNF-α, IL-1β and IL-6 expression (P <  0.01), and increased the expression levels of β-catenin, Wnt4, Wnt5B, PCNA and BMP-2 (P <  0.01). 31796334 2020
Entrez Id: 846
Gene Symbol: CASR
CASR
0.010 AlteredExpression disease BEFREE Knockout (KO) of the Casr gene in chondrocytes lengthened the chondrogenic phase of fracture repair by increasing cell proliferation in soft calluses but retarded subsequent osteogenic activity in hard calluses. 31498905 2020
Entrez Id: 57560
Gene Symbol: IFT80
IFT80
0.010 Biomarker disease BEFREE Mechanistically, loss of IFT80 in chondrocytes resulted in a decrease in cilia formation and chondrocyte proliferation rate in fracture callus compared to the control mice. 31643106 2020
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.010 AlteredExpression disease BEFREE TLR4 knockout promoted fracture healing, reduced the number of osteoclasts, increased bone callus volume (BV) and callus mineralized volume fraction (BV/TV%) (P <  0.05), increased the maximum torque and torsional stiffness of callus (P <  0.05), reduced TNF-α, IL-1β and IL-6 expression (P <  0.01), and increased the expression levels of β-catenin, Wnt4, Wnt5B, PCNA and BMP-2 (P <  0.01). 31796334 2020
Entrez Id: 7099
Gene Symbol: TLR4
TLR4
0.010 Biomarker disease BEFREE TLR4 knockout promoted fracture healing, reduced the number of osteoclasts, increased bone callus volume (BV) and callus mineralized volume fraction (BV/TV%) (P <  0.05), increased the maximum torque and torsional stiffness of callus (P <  0.05), reduced TNF-α, IL-1β and IL-6 expression (P <  0.01), and increased the expression levels of β-catenin, Wnt4, Wnt5B, PCNA and BMP-2 (P <  0.01). 31796334 2020
Entrez Id: 690
Gene Symbol: BTF3P11
BTF3P11
0.010 Biomarker disease BEFREE On day 14 postfracture, we revealed early and increased trabecular formation in the callus of SCI rats, despite a marked 75% decrease in OPG-positive cells, and 41% decrease in density. 31700148 2020
Entrez Id: 5452
Gene Symbol: POU2F2
POU2F2
0.010 Biomarker disease BEFREE Results showed that overexpressing of POU2F2 promoted fracture healing and callus growth. 31782345 2020
Entrez Id: 4091
Gene Symbol: SMAD6
SMAD6
0.010 Biomarker disease BEFREE Overexpressed miR-186 and SMAD6 silencing resulted in increased callus formation, BMD and BV/TV, as well as maximum load, maximum radial degrees, elastic radial degrees, and rigidity of the femur. 31832175 2019
Entrez Id: 8030
Gene Symbol: CCDC6
CCDC6
0.010 Biomarker disease BEFREE Phytochemical analysis of the callus cultures showed higher production of phenolics (TPC:3.0 mg), flavonoids (TFC:1.8 mg), phenylalanine ammonialyase activity (PAL: 5.8 U/mg) and antioxidant activity (90%), respectively, in the callus cultures established on MS media in the presence of 90 ug/l AgNPs. 30856344 2019
Entrez Id: 4602
Gene Symbol: MYB
MYB
0.010 AlteredExpression disease BEFREE Overexpression of <i>MdWRKY11</i> in apple callus could significantly promote anthocyanin accumulation, and the expression of some MYB transcription factors and structural genes increased significantly. 31310107 2019
Entrez Id: 60386
Gene Symbol: SLC25A19
SLC25A19
0.010 Biomarker disease BEFREE Phytochemical analysis of the callus cultures showed higher production of phenolics (TPC:3.0 mg), flavonoids (TFC:1.8 mg), phenylalanine ammonialyase activity (PAL: 5.8 U/mg) and antioxidant activity (90%), respectively, in the callus cultures established on MS media in the presence of 90 ug/l AgNPs. 30856344 2019
Entrez Id: 847
Gene Symbol: CAT
CAT
0.010 Biomarker disease BEFREE Activation of the POD pathway and AsA-GSH cycle was universal in callus and differentiated organs, but salinity-induced SOD pathway and salinity-reduced CAT pathway in callus were different from those in leaves and roots. 31847807 2019
Entrez Id: 4153
Gene Symbol: MBL2
MBL2
0.010 AlteredExpression disease BEFREE Sodium chloride (NaCl) induced expression of a jacalin-related mannose-binding lectin (<i>JRL</i>) gene in leaves, roots, and callus cultures of <i>Populus euphratica</i> (salt-resistant poplar). 30769802 2019
Entrez Id: 406962
Gene Symbol: MIR186
MIR186
0.010 Biomarker disease BEFREE Overexpressed miR-186 and SMAD6 silencing resulted in increased callus formation, BMD and BV/TV, as well as maximum load, maximum radial degrees, elastic radial degrees, and rigidity of the femur. 31832175 2019
Entrez Id: 861
Gene Symbol: RUNX1
RUNX1
0.010 Biomarker disease BEFREE Taken together, these results indicate that Runx1 is a critical transcription factor in controlling osteoclastogenesis that negatively regulates bone and cartilage resorption in the fracture callus. 31769548 2019
Entrez Id: 7033
Gene Symbol: TFF3
TFF3
0.010 Biomarker disease BEFREE Strong TFF3 immunoreactivity was also detected in murine fracture callus. 31480518 2019
Entrez Id: 2308
Gene Symbol: FOXO1
FOXO1
0.010 AlteredExpression disease BEFREE Diabetes increases the risk of fracture, impairs fracture healing and causes rapid loss of the fracture callus cartilage, which was linked to increased FOXO1 expression in chondrocytes. 30904630 2019
Entrez Id: 2044
Gene Symbol: EPHA5
EPHA5
0.010 Biomarker disease BEFREE The observed positive correlation between mRNA levels of EfnB1 with Col10 and Epha5 with Bglap, together with colocalized expression with their respective proteins, suggest that EfnB1 is a positive mediator of prehypertrophic chondrocyte development and that Epha5 contributes to osteoblast-mediated mineralization of fracture callus. 30250975 2019
Entrez Id: 1758
Gene Symbol: DMP1
DMP1
0.010 AlteredExpression disease BEFREE Our previous data have shown that DMP1-PG is richly expressed in the cartilaginous calluses of fracture sites. 31065929 2019
Entrez Id: 28954
Gene Symbol: REM1
REM1
0.010 AlteredExpression disease BEFREE At post-fracture days 7, 14, 21, and 28, the fracture callus and fibrous tissue from the standard healing fractures and nonunions, respectively, were harvested and screened (via real-time PCR) for Rad and Rem1 expression. 31830958 2019
Entrez Id: 2990
Gene Symbol: GUSB
GUSB
0.010 AlteredExpression disease BEFREE The system is tightly regulated and highly sensitive to DEX application, with 6 h of induction sufficient to induce high levels of GUS activity in transgenic callus. 31615413 2019
Entrez Id: 1947
Gene Symbol: EFNB1
EFNB1
0.010 Biomarker disease BEFREE The observed positive correlation between mRNA levels of EfnB1 with Col10 and Epha5 with Bglap, together with colocalized expression with their respective proteins, suggest that EfnB1 is a positive mediator of prehypertrophic chondrocyte development and that Epha5 contributes to osteoblast-mediated mineralization of fracture callus. 30250975 2019