Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 368
Gene Symbol: ABCC6
ABCC6
0.100 CausalMutation disease CLINVAR
Entrez Id: 9429
Gene Symbol: ABCG2
ABCG2
0.010 GeneticVariation disease BEFREE ABCG2 SNP rs2231142 and the gout comorbidities including nephrolithiasis and CKD were associated (<i>P</i> = 0.014 and <i>P</i> = 0.026). 31367212 2019
Entrez Id: 57007
Gene Symbol: ACKR3
ACKR3
0.010 Biomarker disease BEFREE Dent's disease, an X-linked disorder characterized by low molecular weight proteinuria, hypercalciuria, and nephrolithiasis, is due to mutations of the chloride/proton antiporter, CLC-5; ADHH is associated with activating mutations of the calcium-sensing receptor, which is a G protein-coupled receptor; hypophosphatemic hypercalciuric nephrolithiasis associated with rickets is due to mutations in the type 2c sodium-phosphate cotransporter (NPT2c); and familial hypomagnesemia with hypercalciuria is due to mutations of paracellin-1, which is a member of the claudin family of membrane proteins that form the intercellular tight junction barrier in a variety of epithelia. 17872384 2007
Entrez Id: 94
Gene Symbol: ACVRL1
ACVRL1
0.100 Biomarker disease HPO
Entrez Id: 92949
Gene Symbol: ADAMTSL1
ADAMTSL1
0.100 Biomarker disease HPO
Entrez Id: 55256
Gene Symbol: ADI1
ADI1
0.010 Biomarker disease BEFREE Supplementation using vitamin D with calcium was associated with an increased incidence of kidney stones (3 RCTs [n = 39 213]; pooled ARD, 0.33% [95% CI, 0.06% to 0.60%]), but supplementation with calcium alone was not associated with an increased risk (3 RCTs [n = 1259]; pooled ARD, 0.00% [95% CI, -0.87% to 0.87%]). 29677308 2018
Entrez Id: 148
Gene Symbol: ADRA1A
ADRA1A
0.010 Biomarker disease BEFREE Dent's disease, an X-linked disorder characterized by low molecular weight proteinuria, hypercalciuria, and nephrolithiasis, is due to mutations of the chloride/proton antiporter, CLC-5; ADHH is associated with activating mutations of the calcium-sensing receptor, which is a G protein-coupled receptor; hypophosphatemic hypercalciuric nephrolithiasis associated with rickets is due to mutations in the type 2c sodium-phosphate cotransporter (NPT2c); and familial hypomagnesemia with hypercalciuria is due to mutations of paracellin-1, which is a member of the claudin family of membrane proteins that form the intercellular tight junction barrier in a variety of epithelia. 17872384 2007
Entrez Id: 151
Gene Symbol: ADRA2B
ADRA2B
0.010 Biomarker disease BEFREE Dent's disease, an X-linked disorder characterized by low molecular weight proteinuria, hypercalciuria, and nephrolithiasis, is due to mutations of the chloride/proton antiporter, CLC-5; ADHH is associated with activating mutations of the calcium-sensing receptor, which is a G protein-coupled receptor; hypophosphatemic hypercalciuric nephrolithiasis associated with rickets is due to mutations in the type 2c sodium-phosphate cotransporter (NPT2c); and familial hypomagnesemia with hypercalciuria is due to mutations of paracellin-1, which is a member of the claudin family of membrane proteins that form the intercellular tight junction barrier in a variety of epithelia. 17872384 2007
Entrez Id: 10555
Gene Symbol: AGPAT2
AGPAT2
0.100 Biomarker disease HPO
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 Biomarker disease BEFREE Functional deficiency of alanine-glyoxylate aminotransferase in this disease leads to recurrent nephrolithiasis, nephrocalcinosis, systemic oxalosis, and kidney failure. 27568336 2016
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 GeneticVariation disease BEFREE In this study, AGXT gene sequence analyses were performed in 82 patients who were clinically suspected (hyperoxaluria and nephrolithiasis or nephrocalcinosis with or without renal impairment) to have PH1. 27915025 2016
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 GeneticVariation disease CLINVAR Whole exome sequencing frequently detects a monogenic cause in early onset nephrolithiasis and nephrocalcinosis. 28893421 2018
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 GeneticVariation disease BEFREE The new technology could also be helpful in the search for healthy carriers of AGXT mutations amongst family members and their partners, and for screening of AGXT polymorphisms in patients with nephrolithiasis and healthy populations. 11699734 2001
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 Biomarker disease BEFREE In the genetic disease of Primary Hyperoxaluria Type 1 (PH1), an increased endogenous production of oxalate, due to a deficiency of the liver enzyme alanine-glyoxylate aminotransferase (AGT), results in hyperoxaluria and oxalate kidney stones. 28217701 2017
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 GeneticVariation disease BEFREE Two novel AGXT mutations identified in primary hyperoxaluria type-1 and distinct morphological and structural difference in kidney stones. 27644547 2016
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.150 Biomarker disease HPO
Entrez Id: 197
Gene Symbol: AHSG
AHSG
0.010 AlteredExpression disease BEFREE Compared with control group, cellular expression of P47phox and fetuin-A mRNAs in the renal tissue of patients with nephrolithiasis increased, the level of MDA in renal tissue and the level of urinary calcium also increased, but urinary and renal fetuin-A protein and the activities of SOD in renal tissue decreased. 24165691 2014
Entrez Id: 9049
Gene Symbol: AIP
AIP
0.100 Biomarker disease HPO
Entrez Id: 213
Gene Symbol: ALB
ALB
0.030 Biomarker disease BEFREE The criteria for the diagnosis of NPHPT were as follows: serum PTH above the reference range (11-65 pg/mL), normal albumin-corrected serum calcium concentrations, normal 24-h urinary calcium excretion, serum 25OHD above 30 ng/mL, estimated GFR (MDRD) above 60 mL/min/1.73 m2 (with the exclusion of medications such as thiazide diuretics, lithium, bisphosphonates, and denosumab), a history of clinical symptoms of urolithiasis, and a family history of kidney stones. 31542783 2019
Entrez Id: 213
Gene Symbol: ALB
ALB
0.030 Biomarker disease BEFREE Protein supplements are consumed for an expected increase in muscle mass and improved exercise performance, but as their impact on lithogenic parameters are unknown, we aimed to evaluate the effects of Whey protein (WP) and Albumin upon the risk factors for nephrolithiasis. 28331937 2017
Entrez Id: 213
Gene Symbol: ALB
ALB
0.030 Biomarker disease BEFREE The level of urinary supersaturation index was correlated with urinary protein and albumin excretion in nephrolithiasis family. 29594505 2018
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.030 GeneticVariation disease BEFREE Results revealed that subjects with minor TT genotype at rs1256328 (alkaline phosphatase, liver/bone/kidney (ALPL)) have higher susceptibility to nephrolithiasis (odds ratio (OR) = 2.03, p = 0.0013). 31754202 2019
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.030 GeneticVariation disease BEFREE The ALPL SNP, rs1256328, was identified as being significantly associated with kidney stone disease status in a large Chinese Han cohort. 29489416 2018
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.030 GeneticVariation disease BEFREE We identify sequence variants associating with kidney stones at ALPL (rs1256328[T], odds ratio (OR)=1.21, P=5.8 × 10(-10)) and a suggestive association at CASR (rs7627468[A], OR=1.16, P=2.0 × 10(-8)). 26272126 2015
Entrez Id: 259
Gene Symbol: AMBP
AMBP
0.040 Biomarker disease BEFREE Emergence of hypervirulent K. pneumoniae causing complicated UTI in kidney stone patients. 31356929 2019