Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE The COL1A1-PDGFB fusion transcripts could be detected in 10 of 12 paraffin-embedded DFSP tumor specimens (83%). 10565681 1999
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE In attendees, t(17;22) COL1A1-PDGFB FISH testing for classic cases of DFSP is appropriately not being used by respondents. 30155908 2018
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE As in DFSP at other sites, COL1A1- PDGFB chimeric fusion transcripts are present in vulvar and groin DFSP. 12641779 2003
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Large areas of chromosomes 17q and 22q, bounded by COL1A1 and PDGF beta, respectively, were amplified in DFSP. 14633610 2003
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE To analyse the presence of collagen type I alpha 1-platelet-derived growth factor beta (COL1A1-PDGFB) transcripts in 20 cases of dermatofibrosarcoma protuberans (DFSP) and to assess the relationship between COL1A1 breakpoints and clinical and histopathological variables. 19635106 2009
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE A case of dermatofibrosarcoma protuberans of the vulva with a COL1A1/PDGFB fusion identical to a case of giant cell fibroblastoma. 10963386 2000
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Genomic gains of COL1A1-PDGFB were found predominantly in the DFSP component of GCF/DFSP hybrids but in none of the pure GCF, suggesting that these gains are associated with the histologic evolution of GCF into DFSP. 18069662 2008
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Our results verify that the COL1A1-PDGFB fusion transcripts are preserved in the FS areas of most DFSP-FSs. 11272901 2000
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE COL1A1-PDGFB gene fusion is frequent in DFSP, rendering tumor cell proliferation and survival dependent on PDGFRβ (platelet-derived growth factor receptor β) signaling. 24173542 2014
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE In this study, we examined the COL1A1-PDGFB fusion transcripts using frozen specimens from three patients with DFSP. 17478383 2007
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE This is the first report of a DFSP case where the lack of chromosomes 17 and 22 rearrangement and the absence of COL1A1-PDGFB fusion gene have been demonstrated. 18253748 2008
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Transforming activity of the chimeric sequence formed by the fusion of collagen gene COL1A1 and the platelet derived growth factor b-chain gene in dermatofibrosarcoma protuberans. 9771975 1998
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE The COL1A1-PDGFB fusion transcript was found in 100% DFSP-FS and 72% DFSP. 21570152 2011
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Therefore, COL1A1-PDGFB is a useful and accurate tool in diagnosing DFSP in Koreans. 25683993 2015
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE This is the first case of DFSP with multiple copies of COL1A1 and PDGFB not confined to ring chromosomes, showing that DFSP is similar to other borderline malignant mesenchymal tumours, where rings and giant markers are alternative vehicles for amplified material. 10072161 1998
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Dermatofibrosarcoma protuberans is underlined by recurrent collagen type I alpha 1 chain-platelet-derived growth factor B chain (COL1A1-PDGFB) fusions but ~ 4% of typical dermatofibrosarcoma protuberans remain negative for this translocation in routine molecular screening. 29955147 2018
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE DFSP is thought to result from a translocation between platelet-derived growth factor beta (PDGFB, 22q13.1) and type 1 collagen (COL1A1, 17q21≈22) leading to a fusion protein (PDGFB) which stimulates the PDGF receptor. 22780227 2013
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE This finding is in line with previous studies, and suggests further that not only the COL1A1/PDGFB fusion gene formation but also the role of DNA copy number gains in the 17q and 22q regions is crucial per se in the pathogenesis of DFSP. 11435686 2001
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Fluorescence in situ hybridization analysis did not reveal the DFSP fusion gene COL1A1-PDGFB. 19016705 2009
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE These results suggest a role for COL1A1/PDGFB in sarcomatous change in DFSP over time. 23347652 2013
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 Biomarker disease BEFREE Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma. 8988177 1997
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 AlteredExpression disease BEFREE FISH analysis revealed COL1A1-PDGFB gene rearrangement in all DFSP cases (n=7), whereas RT-PCR could detect the COL1A1-PDGFB fusion transcript only in 1 DFSP.Two cases were negative. 20061935 2010
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 AlteredExpression disease BEFREE The COL1A1-PDGFB fusion protein activates the PDGFB receptor and resultant constitutive activation of PDGFR receptor is essential in the pathogenesis of DFSP. 23922791 2013
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 AlteredExpression disease BEFREE Detection of COL1A1-PDGFB fusion transcripts and PDGFB/PDGFRB mRNA expression in dermatofibrosarcoma protuberans. 17431412 2007
Entrez Id: 1277
Gene Symbol: COL1A1
COL1A1
0.400 AlteredExpression disease BEFREE Molecular biology has been valuable in showing dermatofibrosarcoma protuberans and infantile fibrosarcoma that are characterized by COL1A1-PDGFB and ETV6-NTRK3 rearrangements respectively. 30187166 2019