Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 57556
Gene Symbol: SEMA6A
SEMA6A
0.010 Biomarker disease BEFREE Temporal requirement of dystroglycan glycosylation during brain development and rescue of severe cortical dysplasia via gene delivery in the fetal stage. 29360985 2018
Entrez Id: 1605
Gene Symbol: DAG1
DAG1
0.010 Biomarker disease BEFREE Temporal requirement of dystroglycan glycosylation during brain development and rescue of severe cortical dysplasia via gene delivery in the fetal stage. 29360985 2018
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.010 Biomarker disease BEFREE Mutations of genes within the phosphatidylinositol-3-kinase (PI3K)-AKT-MTOR pathway are well known causes of brain overgrowth (megalencephaly) as well as segmental cortical dysplasia (such as hemimegalencephaly, focal cortical dysplasia and polymicrogyria). 28969385 2017
Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
0.010 Biomarker disease BEFREE Mutations of genes within the phosphatidylinositol-3-kinase (PI3K)-AKT-MTOR pathway are well known causes of brain overgrowth (megalencephaly) as well as segmental cortical dysplasia (such as hemimegalencephaly, focal cortical dysplasia and polymicrogyria). 28969385 2017
Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
0.010 Biomarker disease BEFREE Mutations of genes within the phosphatidylinositol-3-kinase (PI3K)-AKT-MTOR pathway are well known causes of brain overgrowth (megalencephaly) as well as segmental cortical dysplasia (such as hemimegalencephaly, focal cortical dysplasia and polymicrogyria). 28969385 2017
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 Biomarker disease BEFREE Mutations of genes within the phosphatidylinositol-3-kinase (PI3K)-AKT-MTOR pathway are well known causes of brain overgrowth (megalencephaly) as well as segmental cortical dysplasia (such as hemimegalencephaly, focal cortical dysplasia and polymicrogyria). 28969385 2017
Entrez Id: 8131
Gene Symbol: NPRL3
NPRL3
0.010 GeneticVariation disease BEFREE Mutations in NPRL3, one of three genes that encode proteins of the mTORC1-regulating GATOR1 complex, have recently been reported to cause cortical dysplasia with focal epilepsy. 26786403 2016
Entrez Id: 9681
Gene Symbol: DEPDC5
DEPDC5
0.010 Biomarker disease BEFREE Mutations in mTOR regulatory genes (e.g., TSC1, TSC2, AKT3, DEPDC5) have been associated with several focal MCD highly associated with epilepsy such as tuberous sclerosis complex (TSC), hemimegalencephaly (HME; brain malformation associated with dramatic enlargement of one brain hemisphere), and cortical dysplasia. mTOR plays important roles in the regulation of cell division, growth, and survival, and, thus, aberrant activation of the cascade during cortical development can cause dramatic alterations in cell size, cortical lamination, and axon and dendrite outgrowth often observed in focal MCD. 25833943 2015
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 AlteredExpression disease BEFREE A total of 10 differentially expressed miRNAs (DEmiRs) that were up-regulated in CD were identified including hsa-miR-21 and hsa-miR-155. 24560344 2014
Entrez Id: 406947
Gene Symbol: MIR155
MIR155
0.010 AlteredExpression disease BEFREE A total of 10 differentially expressed miRNAs (DEmiRs) that were up-regulated in CD were identified including hsa-miR-21 and hsa-miR-155. 24560344 2014
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.010 AlteredExpression disease BEFREE miRNA expression analysis in cortical dysplasia: regulation of mTOR and LIS1 pathway. 24560344 2014
Entrez Id: 10382
Gene Symbol: TUBB4A
TUBB4A
0.010 GeneticVariation disease BEFREE By contrast, TUBB3 and TUBB5 mutations cause milder malformations with focal or multifocal polymicrogyria-like cortical dysplasia with abnormal and simplified gyral pattern. 24860126 2014
Entrez Id: 203068
Gene Symbol: TUBB
TUBB
0.010 GeneticVariation disease BEFREE By contrast, TUBB3 and TUBB5 mutations cause milder malformations with focal or multifocal polymicrogyria-like cortical dysplasia with abnormal and simplified gyral pattern. 24860126 2014
Entrez Id: 4771
Gene Symbol: NF2
NF2
0.010 Biomarker disease BEFREE The present three children had (1) small (<1 cm), bilateral vestibular schwannomas (VSs) detected (as an incidental finding) at magnetic resonance imaging (MRI) by the age of 4 to 5 months that were asymptomatic for 10 to 14 years, with sudden and rapid (<12 months) progression in two cases at the age of 11 and 15 years, respectively; (2) development of large numbers of skin NF2 plaques mainly in atypical locations (i.e. face, hands, legs and knees), which reverted to normal skin appearance at the time of VSs progression; (3) lens opacities (n = 1) and NF2 retinal changes (n = 2) detected as early as age of 3-4 months; (4) diffuse (asymptomatic) high signal lesions at brain MRI in the periventricular regions (alike cortical dysplasia); and (5) unaffected first-degree relatives who did not harbour NF2 gene abnormalities. 23377185 2013
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.010 AlteredExpression disease BEFREE Differential expression of interferon-γ and chemokine genes distinguishes Rasmussen encephalitis from cortical dysplasia and provides evidence for an early Th1 immune response. 23639073 2013
Entrez Id: 361
Gene Symbol: AQP4
AQP4
0.010 Biomarker disease BEFREE Dysregulation of AQP-4 also occurs in hippocampal sclerosis and cortical dysplasia in patients with refractory partial epilepsy. 22714714 2012
Entrez Id: 23316
Gene Symbol: CUX2
CUX2
0.010 AlteredExpression disease BEFREE With the aim to investigate the formation and evolution of CD during development, we analysed the expression of a panel of layer-specific genes (Nurr1, Er81, Ror-β and Cux2, markers of layers VI, V, IV and superficial layers, respectively) in BCNU-treated cortices from E17 to postnatal day 14. 21130845 2011
Entrez Id: 5413
Gene Symbol: SEPTIN5
SEPTIN5
0.010 Biomarker disease BEFREE This report describes for the first time a patient with SEPT5 deficiency presenting with cortical dysplasia (polymicrogyria), developmental delay, and platelet secretion defect. 21800012 2011
Entrez Id: 4929
Gene Symbol: NR4A2
NR4A2
0.010 AlteredExpression disease BEFREE With the aim to investigate the formation and evolution of CD during development, we analysed the expression of a panel of layer-specific genes (Nurr1, Er81, Ror-β and Cux2, markers of layers VI, V, IV and superficial layers, respectively) in BCNU-treated cortices from E17 to postnatal day 14. 21130845 2011
Entrez Id: 2296
Gene Symbol: FOXC1
FOXC1
0.010 GeneticVariation disease BEFREE Cortical dysplasia resembling cobblestone cortex, with basement membrane breakdown and lamination defects, is seen in Foxc1 mutants. 20976766 2010
Entrez Id: 7444
Gene Symbol: VRK2
VRK2
0.010 GeneticVariation disease BEFREE However, the association of the VRK2 gene with cortical dysplasia remains to be determined, as MRI imaging of the brain and gene content of the 2p15-16 deletion becomes established in more patients. 20799320 2010
Entrez Id: 10585
Gene Symbol: POMT1
POMT1
0.010 Biomarker disease BEFREE A MEB phenotype with frontal cortical dysplasia and pons abnormalities was found in two patients with POMT1 and in one with POMT2 mutations, while a WWS phenotype was only found in a case with mutations in POMT1. 18513969 2008
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.010 GeneticVariation disease BEFREE Activation of Akt independent of PTEN and CTMP tumor-suppressor gene mutations in epilepsy-associated Taylor-type focal cortical dysplasias. 17013611 2006
Entrez Id: 5649
Gene Symbol: RELN
RELN
0.010 GeneticVariation disease BEFREE In one family, the association of cortical dysplasia and congenital lymphedema have been related to mutations in the RELN gene. 15578573 2005
Entrez Id: 1742
Gene Symbol: DLG4
DLG4
0.010 Biomarker disease BEFREE These results suggest that increased coassembly of NR2B and NR1 with PSD-95 may underlie one of the cellular mechanisms that contribute to the in situ increased hyperexcitability, leading to seizure generation in focal CD. 15030493 2004