Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 79090
Gene Symbol: TRAPPC6A
TRAPPC6A
0.310 GeneticVariation disease BEFREE A missense mutation in TRAPPC6A leads to build-up of the protein, in patients with a neurodevelopmental syndrome and dysmorphic features. 29391579 2018
Entrez Id: 23556
Gene Symbol: PIGN
PIGN
0.120 GeneticVariation disease BEFREE Hypotonia and intellectual disability without dysmorphic features in a patient with PIGN-related disease. 29096607 2017
Entrez Id: 23556
Gene Symbol: PIGN
PIGN
0.120 GeneticVariation disease BEFREE A homozygous mutation in PIGN, a member of genes involved in the GPI anchor-synthesis pathway, was previously reported to cause dysmorphic features, multiple congenital anomalies, severe neurological impairment, and seizure in a consanguineous family. 24253414 2014
Entrez Id: 1457
Gene Symbol: CSNK2A1
CSNK2A1
0.120 Biomarker disease BEFREE Taking into account that mutations in CSNK2A1, encoding the α subunit of CK2, were previously identified in patients with neurodevelopmental disorders and dysmorphic features, our study confirmed that the protein kinase CK2 plays a major role in brain, and showed that CSNK2, encoding the β subunit, is a novel ID gene. 28585349 2017
Entrez Id: 5373
Gene Symbol: PMM2
PMM2
0.120 Biomarker disease BEFREE From gestalt to gene: early predictive dysmorphic features of PMM2-CDG. 30464053 2019
Entrez Id: 9968
Gene Symbol: MED12
MED12
0.120 Biomarker disease BEFREE He has mild to moderate intellectual disability and some dysmorphic features seen in MED12-related syndromes. 27286923 2016
Entrez Id: 1457
Gene Symbol: CSNK2A1
CSNK2A1
0.120 GeneticVariation disease BEFREE We have performed WES for 4102 (1847 female; 2255 male) intellectual disability/developmental delay cases and we report five patients with a neurodevelopmental disorder associated with developmental delay, intellectual disability, behavioral problems, hypotonia, speech problems, microcephaly, pachygyria and dysmorphic features in whom we have identified de novo missense and canonical splice site mutations in CSNK2A1, the gene encoding CK2α, the catalytic subunit of protein kinase CK2, a ubiquitous serine/threonine kinase composed of two regulatory (β) and two catalytic (α and/or α') subunits. 27048600 2016
Entrez Id: 6942
Gene Symbol: TCF20
TCF20
0.120 GeneticVariation disease BEFREE De novo and inherited TCF20 pathogenic variants are associated with intellectual disability, dysmorphic features, hypotonia, and neurological impairments with similarities to Smith-Magenis syndrome. 30819258 2019
Entrez Id: 55209
Gene Symbol: SETD5
SETD5
0.120 Biomarker disease BEFREE A SET domain containing 5 gene (SETD5) phenotype of ID and dysmorphic features has been previously described in relation to patients with 3p25.3 deletions and in a few individuals with de novo sequence alterations. 28881385 2018
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.120 AlteredExpression disease BEFREE Although validation in additional patients is required, our findings suggest that the dysmorphic features and severe intellectual disability characteristic of PTHS are partially rescued by overexpression of those short TCF4 transcripts encoding a nuclear localization signal, a transcription activation domain, and the basic helix-loop-helix domain. 27179618 2016
Entrez Id: 9968
Gene Symbol: MED12
MED12
0.120 Biomarker disease BEFREE It is likely that more MED12 mutations will be detected in sporadic patients and X-linked families with intellectual disability and dysmorphic features as exome sequencing becomes more commonly utilized, and this overview of MED12-related disorders may help to correlate MED12 genotypes with clinical findings. 24123922 2013
Entrez Id: 5373
Gene Symbol: PMM2
PMM2
0.120 GeneticVariation disease BEFREE The most common form, CDG-Ia, resulting from mutations in the gene encoding the enzyme phosphomannomutase (PMM2), manifests with severe abnormalities in psychomotor development, dysmorphic features and visceral involvement. 11891694 2002
Entrez Id: 6942
Gene Symbol: TCF20
TCF20
0.120 GeneticVariation disease BEFREE Correction to: De novo and inherited TCF20 pathogenic variants are associated with intellectual disability, dysmorphic features, hypotonia, and neurological impairments with similarities to Smith-Magenis syndrome. 30909959 2019
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.120 GeneticVariation disease BEFREE Pitt-Hopkins syndrome is characterized by mental retardation, hyperventilation, and dysmorphic features due to TCF4 mutations. 23248353 2013
Entrez Id: 55209
Gene Symbol: SETD5
SETD5
0.120 GeneticVariation disease BEFREE We present the first familial case of a SETD5 mutation contributing to a phenotype of congenital heart defects and dysmorphic features, with variable expression, in two siblings and their father. 27375234 2016
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.110 Biomarker disease BEFREE De novo duplication of MECP2 in a girl with mental retardation and no obvious dysmorphic features. 20236124 2010
Entrez Id: 340533
Gene Symbol: NEXMIF
NEXMIF
0.110 Biomarker disease BEFREE Pathogenic variants in the neurite extension and migration factor (NEXMIF) gene (formerly named KIAA2022) on the X chromosome are responsible for ID, autistic behavior, epilepsy, or dysmorphic features in males. 29717186 2018
Entrez Id: 2006
Gene Symbol: ELN
ELN
0.110 Biomarker disease BEFREE The dysmorphic features observed in WBS were specific and manifested in majority of cases. 30380201 2018
Entrez Id: 2290
Gene Symbol: FOXG1
FOXG1
0.110 GeneticVariation disease BEFREE Nucleotide alterations of the coding region of FOXG1 have never caused dysmorphic features. 24139857 2014
Entrez Id: 2245
Gene Symbol: FGD1
FGD1
0.110 Biomarker disease BEFREE We suggest that FGD1 analysis may be adequate in ADHD patients who exhibit dysmorphic features suggestive of AAS, also in the absence of the full phenotypical spectrum. 15809997 2005
Entrez Id: 4774
Gene Symbol: NFIA
NFIA
0.110 GeneticVariation disease BEFREE A microdeletion 1p31.3p32.2 which includes the NFIA gene is associated with hypoplasia of the corpus callosum, ventriculomegaly, and dysmorphic features. 19763616 2010
Entrez Id: 23389
Gene Symbol: MED13L
MED13L
0.110 Biomarker disease BEFREE MED13L haploinsufficiency syndrome is a clinical condition manifesting intellectual disability and developmental delay in association with various complications including congenital heart defects and dysmorphic features. 28371282 2017
Entrez Id: 4208
Gene Symbol: MEF2C
MEF2C
0.110 Biomarker disease BEFREE In case 1, CMA revealed an approximately 140 kb deletion encompassing the first three exons of MEF2C in a 3-year-old patient with severe psychomotor retardation, periodic tremor, and an abnormal motor pattern with mirror movement of the upper limbs observed during infancy, hypotonia, abnormal EEG, epilepsy, absence of speech, autistic behavior, bruxism, and mild dysmorphic features. 20333642 2010
Entrez Id: 79718
Gene Symbol: TBL1XR1
TBL1XR1
0.110 GeneticVariation disease BEFREE Recently, a new syndrome with intellectual disability (ID) and dysmorphic features due to deletions or point mutations within the TBL1XR1 gene located in the chromosomal band 3q26.32 has been described (MRD41, OMIM 616944). 28574232 2017
Entrez Id: 89910
Gene Symbol: UBE3B
UBE3B
0.110 GeneticVariation disease BEFREE Here, we report on the identification of homozygous or compound heterozygous UBE3B mutations in six additional patients from five unrelated families using either targeted UBE3B sequencing in individuals with suggestive facial dysmorphic features, or exome sequencing. 24615390 2014