Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5744
Gene Symbol: PTHLH
PTHLH
0.010 Biomarker disease BEFREE ALP = alkaline phosphatase; HPP = hypophosphatasia; PEA = phosphorethanolamine; PLP = pyridoxal-5-phosphate; PPi = inorganic pyrophosphate; TNSALP/TNAP = tissue-nonspecific alkaline phosphatase. 30289311 2018
Entrez Id: 5354
Gene Symbol: PLP1
PLP1
0.010 Biomarker disease BEFREE ALP = alkaline phosphatase; HPP = hypophosphatasia; PEA = phosphorethanolamine; PLP = pyridoxal-5-phosphate; PPi = inorganic pyrophosphate; TNSALP/TNAP = tissue-nonspecific alkaline phosphatase. 30289311 2018
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.010 GeneticVariation disease BEFREE Disease-inherent risk factors included autosomal-recessive, childhood onset HPP, apparently low alkaline phosphatase (ALP) ≤ 20 U/l and substantially elevated pyridoxal 5'-phosphate (PLP) > 3 times upper limit of normal as well as high lumbar spine BMD. 29774402 2018
Entrez Id: 25824
Gene Symbol: PRDX5
PRDX5
0.010 Biomarker disease BEFREE ALP = alkaline phosphatase; HPP = hypophosphatasia; PEA = phosphorethanolamine; PLP = pyridoxal-5-phosphate; PPi = inorganic pyrophosphate; TNSALP/TNAP = tissue-nonspecific alkaline phosphatase. 30289311 2018
Entrez Id: 57026
Gene Symbol: PDXP
PDXP
0.010 Biomarker disease BEFREE ALP = alkaline phosphatase; HPP = hypophosphatasia; PEA = phosphorethanolamine; PLP = pyridoxal-5-phosphate; PPi = inorganic pyrophosphate; TNSALP/TNAP = tissue-nonspecific alkaline phosphatase. 30289311 2018
Entrez Id: 24145
Gene Symbol: PANX1
PANX1
0.010 AlteredExpression disease BEFREE Altogether, these findings suggest that a physiological regulation of extracellular ATP levels and Panx1 changes may compensate for the reduced TNAP activity in this model of HPP. 29551976 2018
Entrez Id: 7439
Gene Symbol: BEST1
BEST1
0.010 GeneticVariation disease BEFREE Disease-inherent risk factors included autosomal-recessive, childhood onset HPP, apparently low alkaline phosphatase (ALP) ≤ 20 U/l and substantially elevated pyridoxal 5'-phosphate (PLP) > 3 times upper limit of normal as well as high lumbar spine BMD. 29774402 2018
Entrez Id: 5396
Gene Symbol: PRRX1
PRRX1
0.010 Biomarker disease BEFREE The authors hypothesized that targeted deletion of Alpl in osteoblasts and selected dental cells ( Col1a1-cKO) or deletion in chondrocytes, osteoblasts, and craniofacial mesenchyme ( Prx1-cKO) would phenocopy skeletal and dental manifestations of late-onset HPP. 27582029 2017
Entrez Id: 50964
Gene Symbol: SOST
SOST
0.010 Biomarker disease BEFREE BPS804 treatment was well tolerated and resulted in increases in bone formation biomarkers and bone mineral density, suggesting that sclerostin inhibition could be applied to enhance bone mineral density, stability, and regeneration in non-life-threatening clinical situations in adults with HPP. 28436937 2017
Entrez Id: 5052
Gene Symbol: PRDX1
PRDX1
0.010 Biomarker disease BEFREE The authors hypothesized that targeted deletion of Alpl in osteoblasts and selected dental cells ( Col1a1-cKO) or deletion in chondrocytes, osteoblasts, and craniofacial mesenchyme ( Prx1-cKO) would phenocopy skeletal and dental manifestations of late-onset HPP. 27582029 2017
Entrez Id: 2035
Gene Symbol: EPB41
EPB41
0.010 Biomarker disease BEFREE Hereditary elliptocytosis (HE) and hereditary pyropoikilocytosis (HPP) are heterogeneous red blood cell (RBC) membrane disorders that result from mutations in the genes encoding α-spectrin (SPTA1), β-spectrin (SPTB), or protein 4.1R (EPB41). 27667160 2016
Entrez Id: 6662
Gene Symbol: SOX9
SOX9
0.010 Biomarker disease BEFREE We used an array including ALPL gene, genes of differential diagnosis COL1A1 and COL1A2 that represent 90% of OI cases, SOX9, responsible for CD, and 8 potentially modifier genes of HPP. 26432670 2015
Entrez Id: 5595
Gene Symbol: MAPK3
MAPK3
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 5167
Gene Symbol: ENPP1
ENPP1
0.010 Biomarker disease BEFREE The expression of PP(i) regulatory genes was altered in HPP pulp cells, including reduction in the progressive ankylosis gene (ANKH) and increased ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1). 22703652 2012
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 23345
Gene Symbol: SYNE1
SYNE1
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.010 AlteredExpression disease BEFREE Kras/KRAS activation was not associated with substantial induction of p16(INK4a) protein expression in mouse colon epithelium or human HPPs. 21699772 2011
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.010 Biomarker disease BEFREE Methylation of CDX2, hMLH1 and TLR2 was detected in SSAs and SSAs with dysplasia but not in HPPs. 21154739 2011
Entrez Id: 64321
Gene Symbol: SOX17
SOX17
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 92304
Gene Symbol: SCGB3A1
SCGB3A1
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 2626
Gene Symbol: GATA4
GATA4
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.010 Biomarker disease BEFREE Methylation of CDX2, hMLH1 and TLR2 may be of diagnostic utility in differentiating, histologically challenging cases of SSAs from HPPs. 21154739 2011
Entrez Id: 54726
Gene Symbol: OTUD4
OTUD4
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 324
Gene Symbol: APC
APC
0.010 AlteredExpression disease BEFREE We investigated the reasons why HPPs with KRAS mutations lack malignant potential and compared the effects of Kras/KRAS activation with those of Apc/APC inactivation, which promotes adenoma formation. 21699772 2011