Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.010 Biomarker disease BEFREE Methylation of CDX2, hMLH1 and TLR2 was detected in SSAs and SSAs with dysplasia but not in HPPs. 21154739 2011
Entrez Id: 64321
Gene Symbol: SOX17
SOX17
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 92304
Gene Symbol: SCGB3A1
SCGB3A1
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 2626
Gene Symbol: GATA4
GATA4
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.010 Biomarker disease BEFREE Methylation of CDX2, hMLH1 and TLR2 may be of diagnostic utility in differentiating, histologically challenging cases of SSAs from HPPs. 21154739 2011
Entrez Id: 54726
Gene Symbol: OTUD4
OTUD4
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.010 PosttranslationalModification disease BEFREE Methylation of CDX2, hMLH1 and TLR2 was detected in SSAs and SSAs with dysplasia but not in HPPs. 21154739 2011
Entrez Id: 6422
Gene Symbol: SFRP1
SFRP1
0.010 Biomarker disease BEFREE A subset of genes including EVL, GATAs (4 and 5), HIN-1, SFRPs (1, 2, 4 and 5), SOX17 and SYNE1 were methylated frequently in all premalignant gastrointestinal adenomas including tubular adenomas, villous adenomas, SSAs and SSAs with dysplasia but infrequently in non-premalignant polyps such as HPPs. 21154739 2011
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Our results indicate that the only way to reliably detect whether individuals are pl-HPP carriers is to perform the ALPL mutation analysis. 21179104 2011
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Hypophosphatasia (HPP) occurs from loss-of-function mutation in the tissue-non-specific alkaline phosphatase (TNALP) gene, resulting in extracellular pyrophosphate accumulation that inhibits skeletal and dental mineralization. 21212313 2011
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Hypophosphatasia (HPP) is a rare inborn disease caused by different mutations in the tissue-nonspecific alkaline phosphatase (ALPL) gene. 21419245 2011
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.020 GeneticVariation disease BEFREE We investigated the reasons why HPPs with KRAS mutations lack malignant potential and compared the effects of Kras/KRAS activation with those of Apc/APC inactivation, which promotes adenoma formation. 21699772 2011
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.010 AlteredExpression disease BEFREE Kras/KRAS activation was not associated with substantial induction of p16(INK4a) protein expression in mouse colon epithelium or human HPPs. 21699772 2011
Entrez Id: 324
Gene Symbol: APC
APC
0.010 AlteredExpression disease BEFREE We investigated the reasons why HPPs with KRAS mutations lack malignant potential and compared the effects of Kras/KRAS activation with those of Apc/APC inactivation, which promotes adenoma formation. 21699772 2011
Entrez Id: 3280
Gene Symbol: HES1
HES1
0.010 AlteredExpression disease BEFREE Abnormalities in Kras-mediated differentiation and proliferation required mitogen-activated protein kinase signaling and were linked to activation of the Hes1 transcription factor.Human HPPs also had activation of HES1. 21699772 2011
Entrez Id: 6329
Gene Symbol: SCN4A
SCN4A
0.040 GeneticVariation disease BEFREE Sporadic periodic paralysis (SPP), the second leading cause of hypokalemic periodic paralysis (HPP) in Asia, has a presentation similar to that of familial periodic paralysis (FPP) and is caused by gene mutations in the calcium (Ca(2+)) (CACNA1S) and sodium (Na(+)) (SCN4A) channels of skeletal muscle. 21841462 2012
Entrez Id: 779
Gene Symbol: CACNA1S
CACNA1S
0.020 GeneticVariation disease BEFREE Sporadic periodic paralysis (SPP), the second leading cause of hypokalemic periodic paralysis (HPP) in Asia, has a presentation similar to that of familial periodic paralysis (FPP) and is caused by gene mutations in the calcium (Ca(2+)) (CACNA1S) and sodium (Na(+)) (SCN4A) channels of skeletal muscle. 21841462 2012
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE A novel ALPL mutation was identified in the twin patients with HPP enrolled in this study. 22014174 2012
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Collectively, these results indicate not only that the intra-subunit disulfide bonds are crucial for TNSALP to properly fold and assemble into the dimeric enzyme, but also that the development of HPP associated with TNSALP (C201Y) or TNSALP (C489S) is attributed to decreased cell surface appearance of the functional enzyme. 22266140 2012
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Hypophosphatasia (HPP) is an inborn error of metabolism characterized by defective bone mineralization caused by a deficiency in alkaline phosphatase (ALP) activity due to mutations in the tissue-nonspecific ALP (TNALP) gene. 22394703 2012
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.020 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 5595
Gene Symbol: MAPK3
MAPK3
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 GeneticVariation disease BEFREE EGFR and ERK1/2 were phosphorylated in the absence of KRAS or BRAF activating mutations in a subset of HPP. 22643351 2012
Entrez Id: 249
Gene Symbol: ALPL
ALPL
0.100 GeneticVariation disease BEFREE Mutations in the gene ALPL in hypophosphatasia (HPP) reduce the function of tissue nonspecific alkaline phosphatase, and the resulting increase in pyrophosphate (PP(i)) contributes to bone and tooth mineralization defects by inhibiting physiologic calcium-phosphate (P(i)) precipitation. 22703652 2012