Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3925
Gene Symbol: STMN1
STMN1
0.010 Biomarker phenotype BEFREE High percentage of CD8<sup>+</sup> tumor-infiltrating cells (TIC) that are PD-1<sup>+</sup>TIM-3<sup>-</sup>LAG-3<sup>-</sup> (% CD8<sup>+</sup>PD-1<sup>+</sup>TIM-3<sup>-</sup>LAG-3<sup>-</sup> TIC) correlated with high levels of T-cell activation and was associated with longer median irPFS and higher irORR. 30670497 2019
Entrez Id: 51196
Gene Symbol: PLCE1
PLCE1
0.010 Biomarker phenotype BEFREE Three proteins (PLCE1, 12/28 [42.86%]; IKBα, 16/28 [57.14%]; p53, 16/28 [57.14%]) were immunoreactive in patients with progressive disease. 30537494 2019
Entrez Id: 7984
Gene Symbol: ARHGEF5
ARHGEF5
0.010 Biomarker phenotype BEFREE Notably, combination of TC PD-L1 expression with % CD8<sup>+</sup>PD-1<sup>+</sup>TIM-3<sup>-</sup>LAG-3<sup>-</sup> TIC identified three groups of patients for which irPFS and irORR were significantly different. 30670497 2019
Entrez Id: 574038
Gene Symbol: MIR431
MIR431
0.010 Biomarker phenotype BEFREE microRNA-431 (miR-431) was underexpressed in patients with ACC with progressive disease undergoing adjuvant therapy. 30918109 2019
Entrez Id: 6962
Gene Symbol: TRBV20OR9-2
TRBV20OR9-2
0.010 Biomarker phenotype BEFREE These constructs antagonize the cognate TCR and bind with high affinity to their cell-bound CD74 receptor on macrophages and dendritic cells, thereby competitively inhibiting downstream signaling and pro-inflammatory effects of macrophage migration inhibitory factor (MIF) and its homolog, D-dopachrome tautomerase (D-DT=MIF-2) that bind to identical residues of CD74 leading to progressive disease. 30683115 2019
Entrez Id: 7450
Gene Symbol: VWF
VWF
0.010 Biomarker phenotype BEFREE In contrast, VWF:Ag and the VWF:Ag/ADAMTS13:AC ratio were significantly lower in patients with SD, PR, and CR than in those with PD (<i>P <</i> 0.05 for both). 31139312 2019
Entrez Id: 8914
Gene Symbol: TIMELESS
TIMELESS
0.010 Biomarker phenotype BEFREE Notably, combination of TC PD-L1 expression with % CD8<sup>+</sup>PD-1<sup>+</sup>TIM-3<sup>-</sup>LAG-3<sup>-</sup> TIC identified three groups of patients for which irPFS and irORR were significantly different. 30670497 2019
Entrez Id: 1116
Gene Symbol: CHI3L1
CHI3L1
0.010 AlteredExpression phenotype BEFREE In RRMS and SPMS patients, increased NFL levels were associated with clinical relapse, and gadolinium-enhanced lesions in MRI (<i>p</i> < 0.001), while high CHI3L1 levels were characteristic of progressive disease (<i>p</i> = 0.01). 31608004 2019
Entrez Id: 7038
Gene Symbol: TG
TG
0.010 AlteredExpression phenotype BEFREE Tg steadily increased in patients with progressive disease (mean percentage change + 27.1% at each follow-up visit), while Tg decreased in patients without any evidence of progression (mean percentage change - 8.8%). 30963467 2019
Entrez Id: 3902
Gene Symbol: LAG3
LAG3
0.010 Biomarker phenotype BEFREE We report 2 patients with BRAF V600 mutant melanoma who were previously treated with anti-PD-1±anti-LAG-3 antibodies and were switched to BRAF/MEK-inhibitors because of progressive disease. 29939877 2019
Entrez Id: 2277
Gene Symbol: VEGFD
VEGFD
0.010 Biomarker phenotype BEFREE Plasma CD73, IL6, and VEGFD were identified as prognostic markers for progressive disease, and IL6 was associated with worse PFS confirming similar observations made in patients treated with other anti-angiogenic agents. 30929823 2019
Entrez Id: 407040
Gene Symbol: MIR34A
MIR34A
0.010 AlteredExpression phenotype BEFREE Also, miR-34a expression level was significantly higher in patients with progressive disease with P value 31554373 2019
Entrez Id: 1060
Gene Symbol: CENPC
CENPC
0.010 GeneticVariation phenotype BEFREE These constructs antagonize the cognate TCR and bind with high affinity to their cell-bound CD74 receptor on macrophages and dendritic cells, thereby competitively inhibiting downstream signaling and pro-inflammatory effects of macrophage migration inhibitory factor (MIF) and its homolog, D-dopachrome tautomerase (D-DT=MIF-2) that bind to identical residues of CD74 leading to progressive disease. 30683115 2019
Entrez Id: 7167
Gene Symbol: TPI1
TPI1
0.010 Biomarker phenotype BEFREE Notably, combination of TC PD-L1 expression with % CD8<sup>+</sup>PD-1<sup>+</sup>TIM-3<sup>-</sup>LAG-3<sup>-</sup> TIC identified three groups of patients for which irPFS and irORR were significantly different. 30670497 2019
Entrez Id: 5054
Gene Symbol: SERPINE1
SERPINE1
0.010 AlteredExpression phenotype BEFREE The patients with progressive disease had statistically significantly higher baseline PAI-1 level (57.9 pg/mL vs. 29.9 pg/mL, P = 0.036). 30880754 2019
Entrez Id: 84868
Gene Symbol: HAVCR2
HAVCR2
0.010 Biomarker phenotype BEFREE Patients with progressive disease showed an increase in the frequency of TIM-3 expressing CD4<sup>+</sup> and CD8<sup>+</sup> T cells, whereas SD-R patients showed a decrease in these subsets. 31515670 2019
Entrez Id: 2395
Gene Symbol: FXN
FXN
0.010 Biomarker phenotype BEFREE Friedreich's ataxia (FRDA) is a progressive disease affecting multiple organs that is caused by systemic insufficiency of the mitochondrial protein frataxin. 30905359 2019
Entrez Id: 6609
Gene Symbol: SMPD1
SMPD1
0.010 Biomarker phenotype BEFREE To explore acid sphingomyelinase (ASM) activity and altered sphingolipid metabolism as potential biomarkers in serum of MS patients, to predict active and progressive disease, and response to disease modifying therapy (DMT). 30553168 2019
Entrez Id: 10563
Gene Symbol: CXCL13
CXCL13
0.010 AlteredExpression phenotype BEFREE Additionally, raised CXCL13 expression was associated with a lower CD4 percentage, higher viral load and a loss of immune function, implying it is associated with progressive disease rather than HIV-specific GC activity in these subjects. 31333650 2019
Entrez Id: 5395
Gene Symbol: PMS2
PMS2
0.010 Biomarker phenotype BEFREE Three patients (BRCA2 frameshift, PDL1 + PDL2 amplification, PMS2 missense) had progressive disease despite targeted therapy. 31327751 2019
Entrez Id: 1025
Gene Symbol: CDK9
CDK9
0.010 Biomarker phenotype BEFREE Prophylactic administration of TAK-079 (3 mg/kg i.v. weekly) was well tolerated and prevented arthritis development compared with vehicle-treated control animals, which exhibited progressive disease with radiographic damage and worsening clinical scores over the study course. 31085699 2019
Entrez Id: 113451
Gene Symbol: AZIN2
AZIN2
0.010 Biomarker phenotype BEFREE Histogram based ADC (10<sup>-6</sup>×mm<sup>2</sup>/s) of these patients decreased significantly (P<0.005) from baseline MRI (T1-CE, FLAIR: 1124.9±160.3, 1098.4±226.2, respectively) to 2months (781.3±110.7, 783.3±103.3) and remained stable during 4months (777.0±138.5, 784.4±155.4, all mean±1 SD), despite progressive disease. 29733920 2019
Entrez Id: 4792
Gene Symbol: NFKBIA
NFKBIA
0.010 Biomarker phenotype BEFREE Three proteins (PLCE1, 12/28 [42.86%]; IKBα, 16/28 [57.14%]; p53, 16/28 [57.14%]) were immunoreactive in patients with progressive disease. 30537494 2019
Entrez Id: 285
Gene Symbol: ANGPT2
ANGPT2
0.010 Biomarker phenotype BEFREE In addition, high angiopoietin-2 at the time of progressive disease was a marker of short post-progression survival (hazard ratio, 4.27). 30402928 2019
Entrez Id: 3250
Gene Symbol: HPR
HPR
0.010 Biomarker phenotype BEFREE In a pair of DX (COG-N-603x) and PD (COG-N-623x) PDXs established from the same patient, COG-N-623x was less responsive to cyclophosphamide + topotecan than COG-N-603x, but both DX and PD PDXs were responsive to 4-HPR + ABT-199. 31484706 2019