Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7183
Gene Symbol: TRC-GCA24-1
TRC-GCA24-1
0.010 Biomarker disease BEFREE These results demonstrated that detection of M. tuberculosis complex in clinical specimens by TRC-2 with ready-to-use reagents was an efficient and rapid method for the diagnosis of pulmonary and extrapulmonary TB. 19741080 2009
Entrez Id: 729230
Gene Symbol: CCR2
CCR2
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 4153
Gene Symbol: MBL2
MBL2
0.010 AlteredExpression disease BEFREE These results indicate that low levels of MBL and AB genotype may be involved in the protection against tuberculosis, especially extrapulmonary tuberculosis in children. 18612667 2008
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 AlteredExpression disease BEFREE Finally, FoxP3 expression was increased 2.3-fold in patients with extrapulmonary TB compared with patients with purely pulmonary TB (p = 0.01) and was amplified 2.6-fold at disease sites relative to blood (p = 0.043). 16339919 2006
Entrez Id: 1521
Gene Symbol: CTSW
CTSW
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 939
Gene Symbol: CD27
CD27
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 100188784
Gene Symbol: AFA1
AFA1
0.010 GeneticVariation disease BEFREE Application of nested polymerase chain reaction (nPCR) using MPB 64 gene primers to detect Mycobacterium tuberculosis DNA in clinical specimens from extrapulmonary tuberculosis patients. 16177475 2005
Entrez Id: 6556
Gene Symbol: SLC11A1
SLC11A1
0.010 GeneticVariation disease BEFREE The Nramp1 alleles were not associated with increased risk for the development of cavities seen on chest radiographs, or with extrapulmonary tuberculosis. 12195379 2002
Entrez Id: 133482
Gene Symbol: SLCO6A1
SLCO6A1
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 373156
Gene Symbol: GSTK1
GSTK1
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE At 24 weeks post ATT commencement, markers underlying the observed increases in MDP scores were IL-27 in PTB and IL-1β in EPTB patients. 31226436 2019
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.020 AlteredExpression disease BEFREE If post-treatment VDR expression reflects expression prior to disease, it may identify persons at risk for extrapulmonary TB. 31039752 2019
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.020 Biomarker disease BEFREE We recently detected Mycobacterium tuberculosis lipoarabinomannan (LAM) and CFP-10 (Rv3874) biomarkers from the urinary EVs of pulmonary TB (PTB) and extrapulmonary TB (EPTB) patients by immuno-polymerase chain reaction (I-PCR) assay and the results were compared with the analogous enzyme-linked immunosorbent assay (ELISA). 31549171 2019
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE Macrophages from persons with previous EPTB had a 38.88 μg/mL increase in median IL-1β production after stimulation with LpqH compared to uninfected contacts (P = 0.01); the effect was similar (44.99 μg/mL) but not statistically significant after controlling for foreign-born status. 31039752 2019
Entrez Id: 399668
Gene Symbol: SMIM10L2A
SMIM10L2A
0.020 Biomarker disease BEFREE Comparison of GeneXpert MTB/RIF assay and LED-FM microscopy for the diagnosis of extra pulmonary tuberculosis in Khyber Pakhtunkhwa, Pakistan. 29752010 2018
Entrez Id: 644596
Gene Symbol: SMIM10L2B
SMIM10L2B
0.020 Biomarker disease BEFREE Comparison of GeneXpert MTB/RIF assay and LED-FM microscopy for the diagnosis of extra pulmonary tuberculosis in Khyber Pakhtunkhwa, Pakistan. 29752010 2018
Entrez Id: 644596
Gene Symbol: SMIM10L2B
SMIM10L2B
0.020 Biomarker disease BEFREE The study objectives are to determine the diagnostic value of a glutaraldehyde test (GT) in pulmonary tuberculosis (PTB) and extra-pulmonary tuberculosis (EPTB) and to assess its performance compared with light-emitting diode fluorescence microscopy (LED-FM). 29091139 2017
Entrez Id: 399668
Gene Symbol: SMIM10L2A
SMIM10L2A
0.020 Biomarker disease BEFREE The study objectives are to determine the diagnostic value of a glutaraldehyde test (GT) in pulmonary tuberculosis (PTB) and extra-pulmonary tuberculosis (EPTB) and to assess its performance compared with light-emitting diode fluorescence microscopy (LED-FM). 29091139 2017
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.020 Biomarker disease BEFREE We compared several gene targets of Mycobacterium tuberculosis, including IS6110, devR, and genes encoding MPB-64 (mpb64), 38kDa (pstS1), 65kDa (hsp65), 30kDa (fbpB), ESAT-6 (esat6), and CFP-10 (cfp10) proteins, using PCR assays on 105 EPTB specimens. 26632387 2016
Entrez Id: 1500
Gene Symbol: CTNND1
CTNND1
0.020 GeneticVariation disease BEFREE There was higher clustering of CAS isolates in TBLN than in any other form of extra pulmonary tuberculosis cases. 26503529 2015
Entrez Id: 1434
Gene Symbol: CSE1L
CSE1L
0.020 GeneticVariation disease BEFREE There was higher clustering of CAS isolates in TBLN than in any other form of extra pulmonary tuberculosis cases. 26503529 2015
Entrez Id: 100528016
Gene Symbol: TMX2-CTNND1
TMX2-CTNND1
0.020 GeneticVariation disease BEFREE There was higher clustering of CAS isolates in TBLN than in any other form of extra pulmonary tuberculosis cases. 26503529 2015
Entrez Id: 3431
Gene Symbol: SP110
SP110
0.020 GeneticVariation disease BEFREE Polymorphisms of SP110 are associated with both pulmonary and extra-pulmonary tuberculosis among the Vietnamese. 25006821 2014
Entrez Id: 100528016
Gene Symbol: TMX2-CTNND1
TMX2-CTNND1
0.020 GeneticVariation disease BEFREE The CAS family lineage was most prevalent genotype in the EPTB cases in our population. 23140853 2013