Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.010 Biomarker disease BEFREE Herein, we show that the NF-κB signaling is active in Glis2 knockout kidney epithelial cells and that genetic inactivation of the toll-like receptor (TLR)/IL-1 receptor or pharmacologic elimination of senescent cells (senolytic therapy) reduces tubule damage, fibrosis, and apoptosis in the Glis2 mouse model of NPHP. 31676329 2020
Entrez Id: 3552
Gene Symbol: IL1A
IL1A
0.010 Biomarker disease BEFREE Herein, we show that the NF-κB signaling is active in Glis2 knockout kidney epithelial cells and that genetic inactivation of the toll-like receptor (TLR)/IL-1 receptor or pharmacologic elimination of senescent cells (senolytic therapy) reduces tubule damage, fibrosis, and apoptosis in the Glis2 mouse model of NPHP. 31676329 2020
Entrez Id: 26574
Gene Symbol: AATF
AATF
0.010 AlteredExpression disease BEFREE Inactivation of Apoptosis Antagonizing Transcription Factor in tubular epithelial cells induces accumulation of DNA damage and nephronophthisis. 30770218 2019
Entrez Id: 1282
Gene Symbol: COL4A1
COL4A1
0.010 GeneticVariation disease BEFREE When examining 549 families with CAKUT, we identified nine additional different heterozygous missense mutations in COL4A1 in 11 individuals from 11 unrelated families with CAKUT, while no COL4A1 mutations were identified in a control cohort with NPHP and only one in the cohort with NS. 31230195 2019
Entrez Id: 56999
Gene Symbol: ADAMTS9
ADAMTS9
0.010 GeneticVariation disease BEFREE Mutations of ADAMTS9 Cause Nephronophthisis-Related Ciliopathy. 30609407 2019
Entrez Id: 124401
Gene Symbol: ANKS3
ANKS3
0.010 Biomarker disease BEFREE Metabolic Phenotyping of Anks3 Depletion in mIMCD-3 cells - a Putative Nephronophthisis Candidate. 29899363 2018
Entrez Id: 554
Gene Symbol: AVPR2
AVPR2
0.010 GeneticVariation disease BEFREE Genetic testing for the nephronophthisis came back negative but was positive for a missense mutation in the AVPR2 gene (p.Arg104Cys) associated with partial nephrogenic diabetes insipidus.He was started on daily desmopressin. 27350623 2017
Entrez Id: 11127
Gene Symbol: KIF3A
KIF3A
0.010 Biomarker disease BEFREE Hence, cell senescence is a central feature in nephronophthisis type 7 and Kif3a is unexpectedly required for efficient DNA damage response and cell cycle arrest. 27181777 2016
Entrez Id: 1020
Gene Symbol: CDK5
CDK5
0.010 Biomarker disease BEFREE We show that long-lasting attenuation of PKD in the juvenile cystic kidneys (jck) mouse model of nephronophthisis by pharmacological inhibition of CDK5 using either R-roscovitine or S-CR8 is accompanied by sustained shortening of cilia and a more normal epithelial phenotype, suggesting this treatment results in a reprogramming of cellular differentiation. 27053712 2016
Entrez Id: 7851
Gene Symbol: MALL
MALL
0.010 GeneticVariation disease BEFREE We report the unexpectedly common retinal involvement of NPHP type 1 with an additional MALL deletion in a Korean cohort. 25401970 2015
Entrez Id: 6927
Gene Symbol: HNF1A
HNF1A
0.010 GeneticVariation disease BEFREE Several phenocopies are known, and mutations in HNF1ß or genes that typically cause other ciliopathies, such as nephronophthisis, Bardet-Biedl, Joubert syndrome and related disorders, can mimic PKD. 24584572 2015
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 GeneticVariation disease BEFREE Here we identified mutations in TRAF3IP1 (TNF Receptor-Associated Factor Interacting Protein 1) in eight patients from five families with nephronophthisis (NPH) and retinal degeneration, two of the most common manifestations of ciliopathies. 26487268 2015
Entrez Id: 1611
Gene Symbol: DAP
DAP
0.010 GeneticVariation disease BEFREE To identify additional DAP components defective in ciliopathies, we independently performed targeted exon sequencing of 1,221 genes associated with cilia and 5 known DAP protein-encoding genes in 1,255 individuals with a nephronophthisis-related ciliopathy. 24882706 2014
Entrez Id: 132320
Gene Symbol: SCLT1
SCLT1
0.010 Biomarker disease BEFREE The molecular composition of DAPs was recently elucidated and mutations in two genes encoding DAPs components (CEP164/NPHP15, SCLT1) have been associated with human ciliopathies, namely nephronophthisis and orofaciodigital syndrome. 24882706 2014
Entrez Id: 79848
Gene Symbol: CSPP1
CSPP1
0.010 Biomarker disease BEFREE Despite the known interaction between CSPP1 and nephronophthisis-associated proteins, none of the affected individuals in our cohort presented with kidney disease, and further, screening of a large cohort of individuals with nephronophthisis demonstrated no mutations. 24360807 2014
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.010 Biomarker disease BEFREE In six sibships, we identify mutations of known nephronophthisis-related ciliopathy genes, while in two additional sibships we found mutations in the known CKD-causing genes SLC4A1 and AGXT as phenocopies of nephronophthisis-related ciliopathy. 24257694 2014
Entrez Id: 6521
Gene Symbol: SLC4A1
SLC4A1
0.010 Biomarker disease BEFREE In six sibships, we identify mutations of known nephronophthisis-related ciliopathy genes, while in two additional sibships we found mutations in the known CKD-causing genes SLC4A1 and AGXT as phenocopies of nephronophthisis-related ciliopathy. 24257694 2014
Entrez Id: 1104
Gene Symbol: RCC1
RCC1
0.010 GeneticVariation disease BEFREE A novel mutation causing nephronophthisis in the Lewis polycystic kidney rat localises to a conserved RCC1 domain in Nek8. 22899815 2012
Entrez Id: 169792
Gene Symbol: GLIS3
GLIS3
0.010 GeneticVariation disease BEFREE In humans, a mutation in the Glis2 gene has been linked to the development of nephronophthisis (NPHP), a recessive cystic kidney disease, while mutations in Glis3 lead to an extended multisystem phenotype that includes the development of neonatal diabetes, polycystic kidneys, congenital hypothyroidism, and facial dysmorphism. 22391303 2012
Entrez Id: 79867
Gene Symbol: TCTN2
TCTN2
0.010 Biomarker disease BEFREE Using 38 interactors as candidates, linkage and sequencing analysis of 250 patients identified ATXN10 and TCTN2 as new NPHP-JBTS genes, and our Tctn2 mouse knockout shows neural tube and Hedgehog signaling defects. 21565611 2011
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.010 GeneticVariation disease BEFREE This case shows that INVS mutation can cause juvenile nephronophthisis with abnormal reactivity of the Wnt/β-catenin pathway. 20798123 2010
Entrez Id: 7077
Gene Symbol: TIMP2
TIMP2
0.010 GeneticVariation disease BEFREE In this report we have used a spontaneous mouse mutant of type 3 nephronophthisis to examine whether the doxycycline-inducible synthesis of Timp-2, a natural inhibitor of matrix metalloproteinases, can influence renal cyst growth in transgenic mice. 19381676 2009
Entrez Id: 224
Gene Symbol: ALDH3A2
ALDH3A2
0.010 Biomarker disease BEFREE Third, 37 patients presenting with NPHP and retinitis pigmentosa (Senior-Løken syndrome [SLS]) were screened for NPHP5/IQCB1 mutations by direct sequencing. 18076122 2008
Entrez Id: 192668
Gene Symbol: CYS1
CYS1
0.010 GeneticVariation disease BEFREE No mutations in known NPHP genes or in the candidate genes, BCL2 and CYS1, were found sufficient to explain NPHP in affected individuals. 17061121 2007
Entrez Id: 57096
Gene Symbol: RPGRIP1
RPGRIP1
0.010 Biomarker disease BEFREE Interaction of nephrocystin-4 and RPGRIP1 is disrupted by nephronophthisis or Leber congenital amaurosis-associated mutations. 16339905 2005