Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2688
Gene Symbol: GH1
GH1
0.010 GeneticVariation disease BEFREE Effects of growth hormone therapy in pediatric patients with growth hormone deficiency and Chiari I malformation: a retrospective study. 31502034 2020
Entrez Id: 962
Gene Symbol: CD48
CD48
0.010 Biomarker disease BEFREE The period prevalence in the entire RT for symptomatic CM1 was 20:100 000; for bCM1 was 10:100 000; and for CM1 and bCM1 together was 30:100 000. 29788393 2019
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.010 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 5251
Gene Symbol: PHEX
PHEX
0.010 GeneticVariation disease BEFREE Common clinical features of XLH include deformities of the lower extremities, short stature, enthesopathies, dental abscesses, as well as skull abnormalities such as craniosynostosis and Chiari I malformation. 31392510 2019
Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
0.010 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 2316
Gene Symbol: FLNA
FLNA
0.010 Biomarker disease BEFREE While FMD is, to date, the primary treatment of symptomatic CM I, the treatment of Chiari malformation type I (CM I) associated syrinx remains controversial. 31152219 2019
Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
0.010 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.010 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 2489
Gene Symbol: FSHMD1A
FSHMD1A
0.010 Biomarker disease BEFREE While FMD is, to date, the primary treatment of symptomatic CM I, the treatment of Chiari malformation type I (CM I) associated syrinx remains controversial. 31152219 2019
Entrez Id: 3538
Gene Symbol: IGLC2
IGLC2
0.010 Biomarker disease BEFREE Anterior decompression followed by anterior stabilization of the C1-C2 segment is a novel and promising approach to treating Chiari malformation type I in association with C2 odontoid process invagination. 28279770 2017
Entrez Id: 5573
Gene Symbol: PRKAR1A
PRKAR1A
0.010 Biomarker disease BEFREE Several identified eQTLs were novel and these implicate genes involved in bone development (IPO8, XYLT1, and PRKAR1A), and ribosomal pathways related to marrow and bone dysfunction, as potential candidates in the development of CMI. 25609184 2015
Entrez Id: 64131
Gene Symbol: XYLT1
XYLT1
0.010 Biomarker disease BEFREE Several identified eQTLs were novel and these implicate genes involved in bone development (IPO8, XYLT1, and PRKAR1A), and ribosomal pathways related to marrow and bone dysfunction, as potential candidates in the development of CMI. 25609184 2015
Entrez Id: 64324
Gene Symbol: NSD1
NSD1
0.010 Biomarker disease BEFREE Because Chiari malformation type I has never been reported in the patients with NSD1-related Sotos syndrome, this finding indicates the possible role of 19p13.2 deletion in patients with mimicking features of Sotos syndrome but have negative NSD1 testing results. 25736188 2015
Entrez Id: 2253
Gene Symbol: FGF8
FGF8
0.010 Biomarker disease BEFREE The genes selected are involved in signalling gradients occurring during segmental patterning of the occipital somites (FGF8, Wnt, and retinoic acid pathways and from bone morphogenetic proteins or BMP, Notch, Cdx and Hox pathways) or in placental angiogenesis, sclerotome development or CMI-associated syndromes. 23437350 2013
Entrez Id: 1044
Gene Symbol: CDX1
CDX1
0.010 GeneticVariation disease BEFREE Multiple marker analysis identified a risk haplotype for classical CMI in ALDH1A2 and CDX1. 23437350 2013
Entrez Id: 8854
Gene Symbol: ALDH1A2
ALDH1A2
0.010 Biomarker disease BEFREE None of these overcame corrections for multiple comparisons, in contrast with four SNPs in CDX1, FLT1 and ALDH1A2 in the classical CMI group. 23437350 2013
Entrez Id: 9573
Gene Symbol: GDF3
GDF3
0.010 Biomarker disease BEFREE In order to investigate the possibility that CMI and KFS are allelic, GDF3 and GDF6 were sequenced leading to the identification of a previously known KFS missense mutation and potential regulatory variants in GDF6. 23620759 2013
Entrez Id: 392255
Gene Symbol: GDF6
GDF6
0.010 AlteredExpression disease BEFREE In order to investigate the possibility that CMI and KFS are allelic, GDF3 and GDF6 were sequenced leading to the identification of a previously known KFS missense mutation and potential regulatory variants in GDF6. 23620759 2013
Entrez Id: 657
Gene Symbol: BMPR1A
BMPR1A
0.010 Biomarker disease BEFREE Single-marker analysis identified nominal associations with 18 SNPs in 14 genes (CDX1, FLT1, RARG, NKD2, MSGN1, RBPJ1, FGFR1, RDH10, NOG, RARA, LFNG, KDR, ALDH1A2, BMPR1A) considering the whole CMI sample. 23437350 2013
Entrez Id: 1387
Gene Symbol: CREBBP
CREBBP
0.010 Biomarker disease BEFREE In the present report, we describe a case of a 2-year-old female with RSTS who, besides most of the typical features of RSTS has corpus callosum dysgenesis and a Chiari type I malformation which required neurosurgical decompression. 20101707 2010
Entrez Id: 8929
Gene Symbol: PHOX2B
PHOX2B
0.010 GeneticVariation disease BEFREE Moreover, to exclude a putative role of PHOX2B in non-CCHS neurologic diseases, we have performed PHOX2B mutation screening in a group of individuals with Chiari I malformation, confirming the exclusive role of PHOX2B in the pathogenesis of CCHS. 16763219 2006
Entrez Id: 8022
Gene Symbol: LHX3
LHX3
0.010 GeneticVariation disease BEFREE Limitation of neck rotation and Chiari-I malformation may suggest Lhx-3 or Lhx-4 mutations (exceedingly rare). 15279086 2004
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.020 Biomarker disease BEFREE Along with the recent literature evidence, we suppose that interactions between FGFR and RAS/MAPK pathway and between RAS/MAPK and PTEN-PI3K/AKT pathways could explain some phenotypic overlapping features and could have a significant role in the pathogenesis of CMI. 31363831 2019
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.020 Biomarker disease BEFREE We suggest that genes within the RAS-MAPK and PI3-AKT pathways might have a significant role in the pathogenesis of CIM in such patients. 28286253 2017