Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 47
Gene Symbol: ACLY
ACLY
0.010 AlteredExpression disease BEFREE We observed an increased expression of PDH and a decreased expression of ACL, PEPCK, and acetyl-GD3 in BD lymphoblast cells compared to normal cells, possibly resulting in the high ROS levels, mitochondrial membrane depolarization, and apoptosis typically found in BD. 23524239 2013
Entrez Id: 53
Gene Symbol: ACP2
ACP2
0.010 Biomarker disease BEFREE The data suggest that lysosomal dysfunction and accumulation of storage material require increased biogenesis of LAP/ACP2 and LAMP-2 positive membranes which makes LAP/ACP2 suitable as biomarker of Batten disease. 17868323 2007
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.020 Biomarker disease BEFREE A single intracerebroventricular (i.c.v.) injection at post-natal day 1 in Cln6 mutant mice delivered scAAV9.CB.CLN6 directly into the CSF, and it prevented or drastically reduced all of the pathological hallmarks of Batten disease. 31331814 2019
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.020 Biomarker disease BEFREE A promoter-dosage effect was observed in all brain regions examined, in which hCLN3 levels were elevated 3- to 8-fold in Cln3(Δex7/8) mice receiving scAAV9/β-actin-hCLN3 versus scAAV9/MeCP2-hCLN3. 27629717 2016
Entrez Id: 174
Gene Symbol: AFP
AFP
0.010 Biomarker disease BEFREE Herein, we discuss the molecular and antigenic properties of AFP which make it a disordered protein, and its ability to induce autoantibody production to AFP cryptic epitopes in both HHC and BD patients. 31585923 2020
Entrez Id: 3267
Gene Symbol: AGFG1
AGFG1
0.010 Biomarker disease BEFREE Interconnections of CLN3, Hook1 and Rab proteins link Batten disease to defects in the endocytic pathway. 15471887 2004
Entrez Id: 351
Gene Symbol: APP
APP
0.010 GeneticVariation disease BEFREE The strongest signal was observed at 16p12.1 (25 cM, 33 Mb; heterogeneity logarithm of odds = 5.3), ∼3 Mb upstream of the ceroid lipofuscinosis 3 (<i>CLN3</i>) gene associated with juvenile neuronal ceroid lipofuscinosis (JNCL), which functions in retromer trafficking and has been reported to alter intracellular processing of the amyloid precursor protein. 30406174 2018
Entrez Id: 23400
Gene Symbol: ATP13A2
ATP13A2
0.300 Biomarker disease CTD_human Characterization of cellular protective effects of ATP13A2/PARK9 expression and alterations resulting from pathogenic mutants. 22847264 2012
Entrez Id: 23400
Gene Symbol: ATP13A2
ATP13A2
0.300 Biomarker disease CTD_human A one base pair deletion in the canine ATP13A2 gene causes exon skipping and late-onset neuronal ceroid lipofuscinosis in the Tibetan terrier. 22022275 2011
Entrez Id: 514
Gene Symbol: ATP5F1E
ATP5F1E
0.020 GeneticVariation disease BEFREE The Saccharomyces cerevisiae gene BTN1, encodes a 408 amino acid putative integral membrane protein, which is 39% identical and 59% similar to the human Cln3p, whose mutant forms are responsible for Batten's disease and for a diminished degradation of mitochondrial ATPase synthase subunit c. Disruption experiments established that Btn1p is not essential for viability, mitochondrial function, or degradation of mitochondrial ATP synthase in yeast. 9219333 1997
Entrez Id: 514
Gene Symbol: ATP5F1E
ATP5F1E
0.020 Biomarker disease BEFREE Accumulating autofluorescent lysosomal storage material in CLN3 disease, consisting of dolichols, lipids, biometals, and a protein that normally resides in the mitochondria, subunit c of the mitochondrial ATPase, provides evidence that autophagosomal-lysosomal turnover of cellular components is disrupted upon loss of CLN3 protein function. 31783699 2019
Entrez Id: 516
Gene Symbol: ATP5MC1
ATP5MC1
0.030 Biomarker disease BEFREE Abnormal degradative pathway of mitochondrial ATP synthase subunit c in late infantile neuronal ceroid-lipofuscinosis (Batten disease). 7668341 1995
Entrez Id: 516
Gene Symbol: ATP5MC1
ATP5MC1
0.030 Biomarker disease BEFREE Specific delay of degradation of mitochondrial ATP synthase subunit c in late infantile neuronal ceroid lipofuscinosis (Batten disease). 7830067 1995
Entrez Id: 516
Gene Symbol: ATP5MC1
ATP5MC1
0.030 GeneticVariation disease BEFREE Variant late-infantile neuronal ceroid lipofuscinosis (vLINCL), caused by CLN6 mutation, and juvenile neuronal ceroid lipofuscinosis (JNCL), caused by CLN3 mutation, share clinical and pathological features, including lysosomal accumulation of mitochondrial ATP synthase subunit c, but the unrelated CLN6 and CLN3 genes may initiate disease via similar or distinct cellular processes. 21359198 2011
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker disease BEFREE Double immunolabeling of brain sections for apoptosis and Bcl-2 supported a protective role for Bcl-2 in the juvenile form of Batten disease. 9151319 1997
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 GeneticVariation disease BEFREE We previously reported that deletion of BTN1 (btn1-delta), an ortholog of the human Batten disease gene CLN3, resulted in a decrease in vacuolar pH during early growth. 14660799 2003
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE We report that the yeast model for JNCL (btn1-Delta) that lacks BTN1, the homologue to human CLN3, has increased resistance to menadione-generated oxidative stress. 17475770 2007
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE S. pombe btn1, the orthologue of the Batten disease gene CLN3, is required for vacuole protein sorting of Cpy1p and Golgi exit of Vps10p. 19299465 2009
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE Here, we investigated a role of one of the putative virulence factors, LmxM.22.0010-encoded BTN1 (a protein involved in Batten disease in humans), in L. mexicana infectivity. 29438445 2018
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE Increased expression of HSP30 and BTN2 in btn1-Delta strains and diminished growth of btn1-Delta, hsp30-Delta, and btn2-Delta strains at low pH reinforce our view that altered pH homeostasis is the underlying cause of Batten disease. 11053386 2000
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE btn1, the Schizosaccharomyces pombe orthologue of the human Batten-disease gene CLN3, is involved in vacuole pH homeostasis. 18697832 2008
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE Deletion of btn1, an orthologue of CLN3, increases glycolysis and perturbs amino acid metabolism in the fission yeast model of Batten disease. 20485751 2010
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 GeneticVariation disease BEFREE Lymphoblast cell lines established from individuals with juvenile Batten disease (JNCL) bearing mutations in CLN3 and yeast strains lacking Btn1p (btn1-Delta), the homolog to CLN3, have decreased intracellular levels of arginine and defective lysosomal/vacuolar transport of arginine. 17341489 2007
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 GeneticVariation disease BEFREE The disease severity of Batten disease-causing mutations (G187A, E295K and V330F), when expressed in btn1 appeared to correlate with their effect on vacuolar pH, suggesting that elevated lysosomal pH contributes to the disease process. 16291725 2005
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 Biomarker disease BEFREE We propose that up-regulation of Btn2p in btn1-delta is an indicator of altered trafficking within the cell, and as btn1-delta serves as a model for the lysosomal storage disorder Batten disease, that altered intracellular trafficking may contribute to some of the cellular pathological hallmarks of this disease. 12615067 2003