Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 728378
Gene Symbol: POTEF
POTEF
0.020 Biomarker disease BEFREE A promoter-dosage effect was observed in all brain regions examined, in which hCLN3 levels were elevated 3- to 8-fold in Cln3(Δex7/8) mice receiving scAAV9/β-actin-hCLN3 versus scAAV9/MeCP2-hCLN3. 27629717 2016
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 GeneticVariation disease BEFREE A second approach will generate mice in which exons 7 and 8 of Cln3 are deleted, mimicking the common mutation in JNCL patients. 10191119 1999
Entrez Id: 54982
Gene Symbol: CLN6
CLN6
0.580 Biomarker disease BEFREE A single intracerebroventricular (i.c.v.) injection at post-natal day 1 in Cln6 mutant mice delivered scAAV9.CB.CLN6 directly into the CSF, and it prevented or drastically reduced all of the pathological hallmarks of Batten disease. 31331814 2019
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.020 Biomarker disease BEFREE A single intracerebroventricular (i.c.v.) injection at post-natal day 1 in Cln6 mutant mice delivered scAAV9.CB.CLN6 directly into the CSF, and it prevented or drastically reduced all of the pathological hallmarks of Batten disease. 31331814 2019
Entrez Id: 728378
Gene Symbol: POTEF
POTEF
0.020 Biomarker disease BEFREE A single intracerebroventricular (i.c.v.) injection at post-natal day 1 in Cln6 mutant mice delivered scAAV9.CB.CLN6 directly into the CSF, and it prevented or drastically reduced all of the pathological hallmarks of Batten disease. 31331814 2019
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 GeneticVariation disease BEFREE A strategy for detection of mutations in CLN3, the gene for Batten disease or juvenile onset neuronal ceroid lipofuscinosis, has been devised using a technique which detects conformation polymorphisms and direct sequencing of genomic DNA fragments. 9151312 1997
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 GeneticVariation disease BEFREE A variant form of late infantile neuronal ceroid lipofuscinosis (CLN5) is not an allelic form of Batten (Spielmeyer-Vogt-Sjögren, CLN3) disease: exclusion of linkage to the CLN3 region of chromosome 16. 8020979 1994
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 GeneticVariation disease CLINVAR A yeast model for the study of Batten disease. 9618513 1998
Entrez Id: 516
Gene Symbol: ATP5MC1
ATP5MC1
0.030 Biomarker disease BEFREE Abnormal degradative pathway of mitochondrial ATP synthase subunit c in late infantile neuronal ceroid-lipofuscinosis (Batten disease). 7668341 1995
Entrez Id: 514
Gene Symbol: ATP5F1E
ATP5F1E
0.020 Biomarker disease BEFREE Accumulating autofluorescent lysosomal storage material in CLN3 disease, consisting of dolichols, lipids, biometals, and a protein that normally resides in the mitochondria, subunit c of the mitochondrial ATPase, provides evidence that autophagosomal-lysosomal turnover of cellular components is disrupted upon loss of CLN3 protein function. 31783699 2019
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 Biomarker disease BEFREE Accumulating autofluorescent lysosomal storage material in CLN3 disease, consisting of dolichols, lipids, biometals, and a protein that normally resides in the mitochondria, subunit c of the mitochondrial ATPase, provides evidence that autophagosomal-lysosomal turnover of cellular components is disrupted upon loss of CLN3 protein function. 31783699 2019
Entrez Id: 696
Gene Symbol: BTN1A1
BTN1A1
0.100 GeneticVariation disease BEFREE Action of BTN1, the yeast orthologue of the gene mutated in Batten disease. 10319861 1999
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 Biomarker disease BEFREE Additionally, there is a loss of Purkinje cells (PC) in regions of robust Bergmann glia activation in Cln3(-/-) mice and human JNCL post-mortem cerebellum. 19230832 2009
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 Biomarker disease GENOMICS_ENGLAND Advantages and pitfalls of an extended gene panel for investigating complex neurometabolic phenotypes. 27604308 2016
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 PosttranslationalModification disease BEFREE Age-dependent alterations in neuronal activity in the hippocampus and visual cortex in a mouse model of Juvenile Neuronal Ceroid Lipofuscinosis (CLN3). 28042098 2017
Entrez Id: 54982
Gene Symbol: CLN6
CLN6
0.580 Biomarker disease CTD_human Altered biometal homeostasis is associated with CLN6 mRNA loss in mouse neuronal ceroid lipofuscinosis. 23789114 2013
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 Biomarker disease BEFREE Although CLN3-related oxidative and mitochondrial stresses have been studied in BD, the pathologic mechanism of the disease is not clearly understood. 23524239 2013
Entrez Id: 1201
Gene Symbol: CLN3
CLN3
1.000 GeneticVariation disease BEFREE Although the CLN3 gene for Batten disease, the most common inherited neurovisceral storage disease of childhood, was identified in 1995, the function of the corresponding protein still remains elusive. 9618513 1998
Entrez Id: 834
Gene Symbol: CASP1
CASP1
0.010 Biomarker disease BEFREE Although the molecular targets of aberrant caspase 1 activity in the context of CLN3 mutation remain to be identified, our studies suggest that caspase 1 may represent a potential therapeutic target to mitigate some attributes of CLN3 disease. 29873075 2019
Entrez Id: 1200
Gene Symbol: TPP1
TPP1
0.600 Biomarker disease CTD_human Aminoglycoside-mediated suppression of nonsense mutations in late infantile neuronal ceroid lipofuscinosis. 11589009 2001
Entrez Id: 2055
Gene Symbol: CLN8
CLN8
0.210 Biomarker disease MGD An early-onset congenic strain of the motor neuron degeneration (mnd) mouse. 10191135 1999
Entrez Id: 6817
Gene Symbol: SULT1A1
SULT1A1
0.020 Biomarker disease BEFREE Analysis of Batten disease candidate genes STP and STM. 7668356 1995
Entrez Id: 9322
Gene Symbol: TRIP10
TRIP10
0.020 Biomarker disease BEFREE Analysis of Batten disease candidate genes STP and STM. 7668356 1995
Entrez Id: 100526830
Gene Symbol: SLX1A-SULT1A3
SLX1A-SULT1A3
0.020 Biomarker disease BEFREE Analysis of Batten disease candidate genes STP and STM. 7668356 1995
Entrez Id: 6818
Gene Symbol: SULT1A3
SULT1A3
0.020 Biomarker disease BEFREE Analysis of Batten disease candidate genes STP and STM. 7668356 1995