Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6606
Gene Symbol: SMN1
SMN1
0.010 Biomarker disease BEFREE LAM is characterized by the proliferation of SMA and HMB-45 positive spindle-shaped and epithelioid cells throughout the lung in the form of discrete lesions causing cystic destruction and ultimately respiratory insufficiency. 24570392 2014
Entrez Id: 142
Gene Symbol: PARP1
PARP1
0.010 Biomarker disease BEFREE Targeting PARP1 may be beneficial in the treatment of LAM and other neoplasm with mTORC1 activation. 24874429 2014
Entrez Id: 151056
Gene Symbol: PLB1
PLB1
0.010 AlteredExpression disease BEFREE Rapamycin-insensitive up-regulation of adipocyte phospholipase A2 in tuberous sclerosis and lymphangioleiomyomatosis. 25347447 2014
Entrez Id: 6607
Gene Symbol: SMN2
SMN2
0.010 Biomarker disease BEFREE LAM is characterized by the proliferation of SMA and HMB-45 positive spindle-shaped and epithelioid cells throughout the lung in the form of discrete lesions causing cystic destruction and ultimately respiratory insufficiency. 24570392 2014
Entrez Id: 5319
Gene Symbol: PLA2G1B
PLA2G1B
0.010 AlteredExpression disease BEFREE We showed that the levels of AdPLA2 transcript and protein were higher in LAM lungs compared with control lungs. 25347447 2014
Entrez Id: 7424
Gene Symbol: VEGFC
VEGFC
0.010 AlteredExpression disease BEFREE LAM lesions express lymphangiogenic growth factors VEGF-C and VEGF-D; growth factor receptors, VEGFR-2 and VEGFR-3; and markers LYVE-1 and podoplanin, and are laced with chaotic lymphatic channels. 25420303 2014
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 Biomarker disease BEFREE MicroRNA-21 is induced by rapamycin in a model of tuberous sclerosis (TSC) and lymphangioleiomyomatosis (LAM). 23555865 2013
Entrez Id: 8061
Gene Symbol: FOSL1
FOSL1
0.010 AlteredExpression disease BEFREE Using a LAM patient-derived cell line (bearing biallelic Tuberin inactivation), we demonstrate that E2 stimulates a robust and biphasic activation of ERK2 and transcription of the late response-gene Fra1 associated with epithelial-to-mesenchymal transition. 23983265 2013
Entrez Id: 4982
Gene Symbol: TNFRSF11B
TNFRSF11B
0.010 Biomarker disease BEFREE Based on these data, it appears that OPG may have tumor-promoting roles in the pathogenesis of lymphangioleiomyomatosis, perhaps acting as both autocrine and paracrine factors. 23867796 2013
Entrez Id: 2048
Gene Symbol: EPHB2
EPHB2
0.010 Biomarker disease BEFREE Our results indicate that targeting the E2-ERK pathway in combination with the mTORC1 pathway may be an effective combination therapy for LAM. 23983265 2013
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 Biomarker disease BEFREE LAM lung nodules showed reactivities to antibodies to tumor necrosis factor-related apoptosis-inducing ligand, receptor activator of NF-κB ligand, syndecan-1, and syndecan-2. 23867796 2013
Entrez Id: 6490
Gene Symbol: PMEL
PMEL
0.010 Biomarker disease BEFREE LAM lung nodules also produced OPG, as shown by expression of OPG mRNA and colocalization of reactivities to anti-OPG and anti-gp100 (HMB45) antibodies in LAM lung nodules. 23867796 2013
Entrez Id: 1674
Gene Symbol: DES
DES
0.010 Biomarker disease BEFREE Lymphangioleiomyomatosis cells coexpress smooth muscle markers (such as smooth muscle actin and desmin) and melanocytic markers (such as HMB-45, Melan-A/MART-1, and microphthalmia transcription factor). 21128782 2010
Entrez Id: 682
Gene Symbol: BSG
BSG
0.010 AlteredExpression disease BEFREE Increased levels of extracellular matrix metalloproteinase inducer colocalized with increased matrix metalloproteinases in lymphangioleiomyomatosis cells indicate that it potentially functions in pulmonary lymphangioleiomyomatosis. 20236683 2010
Entrez Id: 4316
Gene Symbol: MMP7
MMP7
0.010 Biomarker disease BEFREE Examination of LAM tissues shows the expression of cleaved β-catenin products and MMP7 consistent with a model that tuberin-deficient cells acquire invasive properties through a β-catenin-dependent mechanism, which may underlie the development of LAM. 20042714 2010
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.010 Biomarker disease BEFREE These observations are consistent with the notion that chemokines such as CCL2 may serve to determine mobility and specify the site of metastasis of the LAM cell. 19155472 2009
Entrez Id: 56034
Gene Symbol: PDGFC
PDGFC
0.010 Biomarker disease BEFREE Biologically active PDGF-C was produced by primary angiomyolipoma cells in culture and PDGF-C protein was present in the neoplastic smooth muscle cells of 5/5 human angiomyolipoma and 4/5 LAM tissues examined by immunohistochemistry. 18988705 2009
Entrez Id: 6374
Gene Symbol: CXCL5
CXCL5
0.010 AlteredExpression disease BEFREE Quantification of 25 chemokines in bronchoalveolar lavage fluid from LAM patients and healthy volunteers revealed that concentrations of CCL2, CXCL1, and CXCL5 were significantly higher in samples from LAM patients than those from healthy volunteers. 19155472 2009
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.010 AlteredExpression disease BEFREE Increased STAT3 level and activation were also observed in LAM-dissociated (LAMD) cell cultures compared with normal human bronchus fibroblasts (HBFs) from LAM patients. 19596836 2009
Entrez Id: 7965
Gene Symbol: AIMP2
AIMP2
0.010 AlteredExpression disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008
Entrez Id: 1398
Gene Symbol: CRK
CRK
0.010 AlteredExpression disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008
Entrez Id: 1432
Gene Symbol: MAPK14
MAPK14
0.010 AlteredExpression disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.010 Biomarker disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008
Entrez Id: 26073
Gene Symbol: POLDIP2
POLDIP2
0.010 AlteredExpression disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008
Entrez Id: 10598
Gene Symbol: AHSA1
AHSA1
0.010 AlteredExpression disease BEFREE Our study demonstrates that IFNbeta-dependent activation of STATs and p38 MAPK is not sufficient to fully inhibit proliferation of cells with TSC2 dysfunction and that TSC2-dependent inhibition of mTOR/S6K1 cooperates with IFNbeta in inhibiting human LAM and TSC2-null ELT3 cell proliferation. 18094073 2008