Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE DNA-sequence variants associated with IRF6 are major contributors to cleft lip, with or without cleft palate. 15317890 2004
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 GeneticVariation disease BEFREE In addition to syndromic microphthalmia, BMP4 variants have been implicated in non-syndromic cleft lip with or without cleft palate and congenital healed cleft lip indicating different allelic presentations. 31053785 2019
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 GeneticVariation disease BEFREE Association between BMP4 gene polymorphisms and cleft lip with or without cleft palate in a population from South China. 29860186 2018
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 GeneticVariation disease BEFREE BMP4 rs17563 polymorphism and nonsyndromic cleft lip with or without cleft palate: A meta-analysis. 28767592 2017
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 Biomarker disease BEFREE Haplotype-based gene-gene interaction of bone morphogenetic protein 4 and interferon regulatory factor 6 in the etiology of non-syndromic cleft lip with or without cleft palate in a Chilean population. 28133786 2017
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 Biomarker disease BEFREE Experimental evidences have postulated that bone morphogenetic protein 4 gene (Bmp4) is involved in the etiology of cleft lip with or without cleft palate (CL/P) in mice. 19839778 2010
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 GeneticVariation disease BEFREE Analysis of interactions between genetic variants of BMP4 and environmental factors with nonsyndromic cleft lip with or without cleft palate susceptibility. 19914800 2010
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 GeneticVariation disease BEFREE Association of bone morphogenetic protein 4 gene polymorphisms with nonsyndromic cleft lip with or without cleft palate in Chinese children. 18771417 2008
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.370 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 7341
Gene Symbol: SUMO1
SUMO1
0.340 Biomarker disease BEFREE SUMO1 has been implicated as having a role in the causation of cleft lip with or without cleft palate (CLP), both directly and through association studies in humans and, perhaps more controversially, in transgenic mouse studies. 22492558 2012
Entrez Id: 7341
Gene Symbol: SUMO1
SUMO1
0.340 Biomarker disease GENOMICS_ENGLAND SUMO1 has been implicated as having a role in the causation of cleft lip with or without cleft palate (CLP), both directly and through association studies in humans and, perhaps more controversially, in transgenic mouse studies. 22492558 2012
Entrez Id: 7341
Gene Symbol: SUMO1
SUMO1
0.340 Biomarker disease BEFREE SUMO1 as a candidate gene for non-syndromic cleft lip with or without cleft palate: no evidence for the involvement of common or rare variants in Central European patients. 21044801 2011
Entrez Id: 7341
Gene Symbol: SUMO1
SUMO1
0.340 Biomarker disease BEFREE The risk factors identified in this study may provide a better understanding of the etiological role of SUMO1 in nonsyndromic cleft lip with or without cleft palate incidence. 20738159 2010
Entrez Id: 7341
Gene Symbol: SUMO1
SUMO1
0.340 GeneticVariation disease BEFREE SUMO1 polymorphisms are associated with non-syndromic cleft lip with or without cleft palate. 18983974 2008
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.320 GeneticVariation disease BEFREE Identification of Novel Variants in the PVRL1 Gene in Patients With Nonsyndromic Cleft Lip With or Without Cleft Palate. 26953873 2016
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.320 Biomarker disease BEFREE PVRL1 as a candidate gene for nonsyndromic cleft lip with or without cleft palate: no evidence for the involvement of common or rare variants in southern Han Chinese patients. 22455396 2012
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.320 Biomarker disease GENOMICS_ENGLAND Mutations of PVRL1, encoding a cell-cell adhesion molecule/herpesvirus receptor, in cleft lip/palate-ectodermal dysplasia. 10932188 2000
Entrez Id: 9411
Gene Symbol: ARHGAP29
ARHGAP29
0.310 Biomarker disease GENOMICS_ENGLAND A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. 27033726 2016
Entrez Id: 9411
Gene Symbol: ARHGAP29
ARHGAP29
0.310 GeneticVariation disease BEFREE Expression and mutation analyses implicate ARHGAP29 as the etiologic gene for the cleft lip with or without cleft palate locus identified by genome-wide association on chromosome 1p22. 23008150 2012
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation disease BEFREE Methylenetetrahydrofolate reductase (MTHFR) polymorphisms are thought to be involved in the development of cleft lip with or without cleft palate (NSCL/P), but published results are contradictory. 31303355 2019
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 Biomarker disease BEFREE Gene-gene interaction between MSX1 and TP63 in Asian case-parent trios with nonsyndromic cleft lip with or without cleft palate. 29341488 2018
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Association of MSX1 c.*6C > T Variant with Nonsyndromic Cleft Lip With or Without Cleft Palate in Turkish Patients. 27228008 2016
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation disease BEFREE MTR, MTRR, and MTHFR Gene Polymorphisms and Susceptibility to Nonsyndromic Cleft Lip With or Without Cleft Palate. 27167580 2016
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation disease BEFREE rs1801133C>T polymorphism in MTHFR is a risk factor for nonsyndromic cleft lip with or without cleft palate in the Brazilian population. 25808365 2015