Source: ALL
Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8200
Gene Symbol: GDF5
GDF5
0.100 Biomarker group HPO
Entrez Id: 658
Gene Symbol: BMPR1B
BMPR1B
0.100 Biomarker group HPO
Entrez Id: 160140
Gene Symbol: C11orf65
C11orf65
0.100 GeneticVariation group CLINVAR
Entrez Id: 6389
Gene Symbol: SDHA
SDHA
0.100 Biomarker group HPO
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 Biomarker group BEFREE <b>Conclusions:</b> Our study revealed that PD-L1 and FOXP3+Tregs may work synergistically in promoting immune evasion of the tumors in soft tissue sarcoma. 28819402 2017
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.200 Biomarker group BEFREE <b>Purpose:</b> A phase Ib study of dasatinib plus ipilimumab in patients with gastrointestinal stromal tumor (GIST) and other sarcomas was performed on the basis of preclinical data demonstrating that combined KIT and CTLA-4 blockade is synergistic.<b>Experimental Design:</b> A standard 3 + 3 design was used to evaluate the safety, efficacy, and immune correlates of treatment. 28007774 2017
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.010 Biomarker group BEFREE <b>Purpose:</b> A phase Ib study of dasatinib plus ipilimumab in patients with gastrointestinal stromal tumor (GIST) and other sarcomas was performed on the basis of preclinical data demonstrating that combined KIT and CTLA-4 blockade is synergistic.<b>Experimental Design:</b> A standard 3 + 3 design was used to evaluate the safety, efficacy, and immune correlates of treatment. 28007774 2017
Entrez Id: 7514
Gene Symbol: XPO1
XPO1
0.020 AlteredExpression group BEFREE <b>Purpose:</b> Selinexor, a small molecule that inhibits nuclear export protein XPO1, has demonstrated efficacy in solid tumors and hematologic malignancies with the evidence of clinical activity in sarcoma as a single agent. 28314790 2017
Entrez Id: 5894
Gene Symbol: RAF1
RAF1
0.100 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 22882
Gene Symbol: ZHX2
ZHX2
0.080 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 545
Gene Symbol: ATR
ATR
0.010 Biomarker group BEFREE <i>In vivo</i>, simultaneous inhibition of ATR and GLUT1 significantly reduced tumor volume gain in an autochthonous mouse model of <i>Kras<sup>G12D</sup></i> -driven soft tissue sarcoma. 31405847 2019
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.070 Biomarker group BEFREE <sup>18</sup>F-FDG PET/MRI for Therapy Response Assessment of Isolated Limb Perfusion in Patients with Soft-Tissue Sarcomas. 30926647 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
1.000 GeneticVariation group BEFREE (2) Coincidental p53 allele mutation and PML loss shifts the tumor profile toward sarcoma formation, which is paralleled in human leiomyosarcomas (indicated by immunohistochemistry; IHC). 23656786 2013
Entrez Id: 2335
Gene Symbol: FN1
FN1
0.050 Biomarker group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 3902
Gene Symbol: LAG3
LAG3
0.040 AlteredExpression group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 1218
Gene Symbol: CMD1B
CMD1B
0.020 AlteredExpression group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 10855
Gene Symbol: HPSE
HPSE
0.010 AlteredExpression group BEFREE 1) To evaluate heparanase levels in adult soft tissue sarcomas (STS); 2) To examine the correlation between heparanase levels and pathological and clinical parameters and treatment outcome. 24887057 2014
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.020 Biomarker group BEFREE 51:3011-3017) have demonstrated that murine sarcoma and colon adenocarcinoma cells express high affinity interleukin-4 receptors (IL-4R) which are internalized after binding to a chimeric ligand consisting of IL-4 and Pseudomonas exotoxin. 8423237 1993
Entrez Id: 7157
Gene Symbol: TP53
TP53
1.000 GeneticVariation group BEFREE Soft tissue sarcoma (STS) also develops, though less frequently, in burn scars. p53 gene mutations were analyzed in paraffin-embedded specimens from 5 patients with STS (4 males and 1 female) that had arisen in a burn scar, by means of polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) followed by direct sequencing. 10359041 1999
Entrez Id: 5947
Gene Symbol: RBP1
RBP1
0.010 Biomarker group BEFREE Sarcoma virus 40-immortalized human mammary epithelial cells (MTSV1-7) devoid of CRBP-I were transfected with wild-type CRBP-I or CRBP-I point mutants with low RA binding affinity. 15632377 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
1.000 GeneticVariation group BEFREE Sarcomas represent a rational target for this approach given the high frequency of p53 mutations (40-75%) and MDM-2 amplification (10-30%). 15647767 2005
Entrez Id: 4193
Gene Symbol: MDM2
MDM2
0.400 GeneticVariation group BEFREE Sarcomas represent a rational target for this approach given the high frequency of p53 mutations (40-75%) and MDM-2 amplification (10-30%). 15647767 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
1.000 GeneticVariation group BEFREE Soft tissue sarcomas frequently carry p53 mutations reducing chemotherapeutical response. 15736417 2005
Entrez Id: 1647
Gene Symbol: GADD45A
GADD45A
0.020 Biomarker group LHGDN Soft tissue sarcoma cells are highly sensitive to AKT blockade: a role for p53-independent up-regulation of GADD45 alpha. 18413758 2008