Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7371
Gene Symbol: UCK2
UCK2
0.110 GeneticVariation disease BEFREE Testicular germ cell tumor susceptibility associated with the UCK2 locus on chromosome 1q23. 23462292 2013
Entrez Id: 22843
Gene Symbol: PPM1E
PPM1E
0.110 GeneticVariation disease BEFREE In the combined analysis, risk of TGCT was significantly associated with markers at four previously unreported loci: 4q22.2 in HPGDS (per-allele odds ratio (OR) = 1.19, 95% confidence interval (CI) = 1.12-1.26; P = 1.11 × 10(-8)), 7p22.3 in MAD1L1 (OR = 1.21, 95% CI = 1.14-1.29; P = 5.59 × 10(-9)), 16q22.3 in RFWD3 (OR = 1.26, 95% CI = 1.18-1.34; P = 5.15 × 10(-12)) and 17q22 (rs9905704: OR = 1.27, 95% CI = 1.18-1.33; P = 4.32 × 10(-13) and rs7221274: OR = 1.20, 95% CI = 1.12-1.28; P = 4.04 × 10(-9)), a locus that includes TEX14, RAD51C and PPM1E. 23666239 2013
Entrez Id: 29842
Gene Symbol: TFCP2L1
TFCP2L1
0.110 Biomarker disease BEFREE TFCP2L1 joins the growing list of genes located within TGCT risk loci with biologically plausible roles in developmental transcriptional regulation, further highlighting the importance of this phenomenon in TGCT oncogenesis. 29560096 2018
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 AlteredExpression disease BEFREE Our results suggest a lack of correlation between cisplatin-induced apoptosis, p53 status and expression of Bcl-2 family proteins in our panel of TGCT cell lines. 9389577 1997
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Notwithstanding the peculiar sensitivity to cisplatin-based treatment, resulting in a very high percentage of cures even in advanced stages of the disease, still we do not know the biological mechanisms that make Testicular Germ Cell Tumor (TGCT) "unique" in the oncology scene. p53 and MDM2 seem to play a pivotal role, according to several in vitro observations, but no correlation has been found between their mutational or expression status in tissue samples and patients clinical outcome. 27821802 2016
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 GeneticVariation disease BEFREE Human male germ cell tumor resistance to cisplatin is linked to TP53 gene mutation. 9620551 1998
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE A miR-199a/miR-214 self-regulatory network via PSMD10, TP53 and DNMT1 in testicular germ cell tumor. 25231260 2014
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE As NT2, NCCIT and S2 were readily triggered into apoptosis, while 2102 EP cells failed to undergo cisplatin-induced apoptosis, our data suggest that the presence of wild-type and/or transactivation-competent p53 might not be an absolute prerequisite for efficient induction of apoptosis in TGCT cell lines. 9635829 1998
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Our p53 data suggest that, at least in this panel of non-isogeneic TGCT cell lines, hypersensitivity to therapeutic agents is not associated with p53 status. 10225454 1999
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.050 Biomarker disease BEFREE A miR-125b/CSF1-CX3CL1/tumor-associated macrophage recruitment axis controls testicular germ cell tumor growth. 30237497 2018
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.050 AlteredExpression disease BEFREE In cases of TGCT and PVNS carrying this translocation, it is present in a minority of the intratumoral cells, leading to CSF1 expression only in these cells, whereas the majority of cells express CSF1R but not CSF1, suggesting a tumor-landscaping effect with aberrant CSF1 expression in the neoplastic cells, leading to the abnormal accumulation of nonneoplastic cells that form a tumorous mass. 16407111 2006
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.050 AlteredExpression disease BEFREE High aberrant expression of CSF1 has been implicated in the development of TGCT and recent studies have shown promising activity of several CSF1R inhibitors against benign diffuse-type TGCT; however, little is known about their effects in malignant TGCT. 30594158 2018
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.050 Biomarker disease BEFREE The consistent presence of CSF1 overexpression in all cases of PVNS/TGCT and reactive synovitides suggests both an important role for CSF1 in the spectrum of synovial pathologies and the possibility of targeting the CSF1/CSF1R interaction therapeutically. 17527089 2007
Entrez Id: 1435
Gene Symbol: CSF1
CSF1
0.050 Biomarker disease BEFREE We aimed to evaluate pexidartinib, a CSF1 receptor inhibitor, in patients with TGCT to provide them with a viable systemic treatment option, especially in cases that are not amenable to surgical resection. 31229240 2019
Entrez Id: 81848
Gene Symbol: SPRY4
SPRY4
0.040 GeneticVariation disease BEFREE Using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis, we investigated allele and genotype frequencies for KITLG (rs995030, rs1508595), SPRY4 (rs4624820, rs6897876), BAK1 (rs210138), BMP7 (rs388286), TGFBR3 (rs12082710), and HOXD (rs17198432) in 142 TGCT patients, 137 TM patients, and 153 fertile men (control group). 30027931 2019
Entrez Id: 81848
Gene Symbol: SPRY4
SPRY4
0.040 Biomarker disease BEFREE Our findings indicate that SPRY4 and SPRY4-IT1 may act as oncogenes in TGCTs via activation of the PI3K / Akt signalling pathway. 29410498 2018
Entrez Id: 81848
Gene Symbol: SPRY4
SPRY4
0.040 GeneticVariation disease BEFREE We observed strong association between SNPs in all six genes and TGCT (lowest P-value per gene: ATF7IP 6.2 × 10(-6); BAK1 2.1 × 10(-10); DMRT1 6.7 × 10(-25); KITLG 2.1 × 10(-48); SPRY4 1.4 × 10(-29); TERT 1.8 × 10(-18)). 23640991 2013
Entrez Id: 81848
Gene Symbol: SPRY4
SPRY4
0.040 Biomarker disease BEFREE Multiple TGCT susceptibility loci have been identified, and we have shown that one of these, SPRY4, may act as a TGCT oncogene. 31235829 2019
Entrez Id: 1436
Gene Symbol: CSF1R
CSF1R
0.030 AlteredExpression disease BEFREE In cases of TGCT and PVNS carrying this translocation, it is present in a minority of the intratumoral cells, leading to CSF1 expression only in these cells, whereas the majority of cells express CSF1R but not CSF1, suggesting a tumor-landscaping effect with aberrant CSF1 expression in the neoplastic cells, leading to the abnormal accumulation of nonneoplastic cells that form a tumorous mass. 16407111 2006
Entrez Id: 1436
Gene Symbol: CSF1R
CSF1R
0.030 Biomarker disease BEFREE We recently demonstrated that CSF1, the ligand of the tyrosine kinase receptor, CSF1R, can be translocated in pigmented villonodular synovitis (PVNS) and tenosynovial giant cell tumor (TGCT). 17527089 2007
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.030 Biomarker disease BEFREE We conclude that the cisplatin-induced apoptotic pathway in TGCT cell lines might be p53-independent and is probably not associated with differences in the Bcl-2/Bax rheostat. 9389577 1997
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.030 Biomarker disease BEFREE This study suggests for the first time an involvement of <i>E2F1</i> CNVs in TGCT susceptibility and supports previous preliminary data on the importance of AKT/mTOR signaling pathway in this cancer. 28104681 2017
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.030 GeneticVariation disease BEFREE Genetic variation in AKT1, PTEN and the 8q24 locus, and the risk of testicular germ cell tumor. 23639623 2013
Entrez Id: 1436
Gene Symbol: CSF1R
CSF1R
0.030 AlteredExpression disease BEFREE High aberrant expression of CSF1 has been implicated in the development of TGCT and recent studies have shown promising activity of several CSF1R inhibitors against benign diffuse-type TGCT; however, little is known about their effects in malignant TGCT. 30594158 2018
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.030 Biomarker disease BEFREE The present study suggests that, at least in our panel of TGCT cell lines, hypersensitivity for cisplatin-induced apoptosis might not be necessarily correlated with the presence of wild-type p53 and is probably not associated with Bcl-2 and Bax expression. 9635829 1998