Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.040 Biomarker disease BEFREE 85.7% vs 14.3% of BRAF+ had desmoplastic reaction (P=.02). 29567362 2018
Entrez Id: 2817
Gene Symbol: GPC1
GPC1
0.010 AlteredExpression disease BEFREE Desmoplastic ameloblastomas exhibited the highest expression of glypican-1 (100%), followed by the peripheral (66%), solid/multicystic (51.2%), and unicystic (47.2%) types, showing statistically significant differences among them (P<0.001). 25046223 2015
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 Biomarker disease BEFREE Tumor necrosis factor alpha and interleukin 11 secreted by malignant breast epithelial cells inhibit adipocyte differentiation by selectively down-regulating CCAAT/enhancer binding protein alpha and peroxisome proliferator-activated receptor gamma: mechanism of desmoplastic reaction. 11280794 2001
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.040 AlteredExpression disease BEFREE HER2/neu overexpression (3+) and c-kit expression are uncommon in desmoplastic small round cell tumors. 12640103 2003
Entrez Id: 4613
Gene Symbol: MYCN
MYCN
0.010 AlteredExpression disease BEFREE MYCN amplification and over-expression has been reported in medulloblastoma, and especially in the desmoplastic type. 15975048 2005
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.100 Biomarker disease BEFREE EWSR1 FISH was sensitive among high-grade round cell sarcomas (positive in 100% of desmoplastic small round cell tumors and 96% of Ewing sarcoma/primitive neuroectodermal tumors) but not specific because clear cell sarcoma, extraskeletal myxoid chondrosarcoma, and a subset of round cell liposarcomas also harbor rearrangements of EWSR1. 21128778 2010
Entrez Id: 1293
Gene Symbol: COL6A3
COL6A3
0.010 Biomarker disease BEFREE COL6A3 was mainly present in the desmoplastic stroma of PDA, with high deposition around the malignant ducts and in between the sites of stromal fatty infiltration. 21719059 2011
Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
0.010 Biomarker disease BEFREE BRG1 positivity was heterogenous in desmoplastic round cell tumors and adult granulosa cell tumors. 26135561 2015
Entrez Id: 27143
Gene Symbol: PALD1
PALD1
0.010 AlteredExpression disease BEFREE Palladin expression is a conserved characteristic of the desmoplastic tumor microenvironment and contributes to altered gene expression. 26333695 2015
Entrez Id: 23022
Gene Symbol: PALLD
PALLD
0.010 AlteredExpression disease BEFREE Palladin expression is a conserved characteristic of the desmoplastic tumor microenvironment and contributes to altered gene expression. 26333695 2015
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.020 Biomarker disease BEFREE BAP1 Immunohistochemistry and p16 FISH in the Diagnosis of Sarcomatous and Desmoplastic Mesotheliomas. 26900815 2016
Entrez Id: 1485
Gene Symbol: CTAG1B
CTAG1B
0.010 AlteredExpression disease BEFREE NY-ESO-1 expression was found in 88.2% of myxoid liposarcomas, 61.1% of synovial sarcomas, 31.3% of osteosarcomas, 21.4% of pleomorphic liposarcomas, 16.7% of desmoplastic small round cell tumors, and 14.3% of chondrosarcomas. 28744588 2017
Entrez Id: 246100
Gene Symbol: CTAG1A
CTAG1A
0.010 AlteredExpression disease BEFREE NY-ESO-1 expression was found in 88.2% of myxoid liposarcomas, 61.1% of synovial sarcomas, 31.3% of osteosarcomas, 21.4% of pleomorphic liposarcomas, 16.7% of desmoplastic small round cell tumors, and 14.3% of chondrosarcomas. 28744588 2017
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 Biomarker disease BEFREE IL-6 plays a role in cancer pathogenesis via its connection to proteins involved in the formation of desmoplastic stroma and to immunosuppression by driving differentiation of myeloid suppressor cells together with TGF-β. 30617223 2019
Entrez Id: 6663
Gene Symbol: SOX10
SOX10
0.010 Biomarker disease BEFREE SOX-10 positivity of non-melanocytes in re-excision specimen could complicate the evaluation of invasive melanoma with an invasive desmoplastic component. 30950082 2019
Entrez Id: 7076
Gene Symbol: TIMP1
TIMP1
0.010 AlteredExpression disease BEFREE A good correlation was seen between overexpression of these MMPs and TIMPs and the steady-state levels of transcripts coding for extracellular matrix proteins, the amount of collagen protein and the severity of the desmoplastic reaction. 7635566 1995
Entrez Id: 5888
Gene Symbol: RAD51
RAD51
0.010 GeneticVariation disease BEFREE A significant association between the RAD51 172G>T polymoprhism and desmoplastic reaction of colorectal cancer was demonstrated. 30358196 2019
Entrez Id: 4151
Gene Symbol: MB
MB
0.010 Biomarker disease BEFREE Although nuclear reactivity of the early myogenic regulatory factors (MyoD, myogenin, Myf5) was not detected, myoglobin immunoreactivity was present in 29% of desmoplastic small round cell tumors. 12640103 2003
Entrez Id: 2247
Gene Symbol: FGF2
FGF2
0.010 Biomarker disease BEFREE Although the function of bFGF in normal cells remains unknown, its production in neoplastic conditions may be responsible for the associated desmoplastic and angioblastic proliferations. 8119718 1994
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.100 AlteredExpression disease BEFREE Although WT1 immunohistochemistry reflects the EWS-WT1 fusion transcript in most desmoplastic small round cell tumors, some cases express full-length WT1 or have variant transcripts, resulting in atypical staining patterns. 18703217 2008
Entrez Id: 2118
Gene Symbol: ETV4
ETV4
0.010 AlteredExpression disease BEFREE Among the other 110 tumors, only six cases (four Ewing sarcomas, one alveolar rhabdomyosarcoma, and one desmoplastic round-cell tumor) showed focal (<5% of tumor cells) and very weak nuclear expression of ETV4; all other tumors were completely negative for ETV4. 27562494 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.040 GeneticVariation disease BEFREE An activating point mutation of the BRAF oncogene has been identified in a high proportion of conventional cutaneous melanomas, but its frequency in the desmoplastic subtype is not known. 15641040 2005
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.020 Biomarker disease BEFREE BAP1 Immunohistochemistry and p16 FISH in the Diagnosis of Sarcomatous and Desmoplastic Mesotheliomas. 26900815 2016
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 Biomarker disease BEFREE BAP1 Immunohistochemistry and p16 FISH in the Diagnosis of Sarcomatous and Desmoplastic Mesotheliomas. 26900815 2016
Entrez Id: 1490
Gene Symbol: CCN2
CCN2
0.030 AlteredExpression disease BEFREE Because patients with high CTGF mRNA expression levels have a better prognosis, our findings indicate that the desmoplastic reaction provides a growth disadvantage for pancreatic cancer cells. 15457365 2004