Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.330 AlteredExpression group BEFREE Depletion of KCTD2 using a KCTD2-specific short-hairpin RNA in U87MG glioma cells and primary Ink4a/Arf-deficient murine astrocytes markedly increased self-renewal activity in addition with an increased expression of stem cell markers, and mouse in vivo intracranial tumor growth. 28060381 2017
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.330 GeneticVariation group BEFREE The genetic analysis of DNA from the original tumor, the bone metastasis and the autoptic brain tumor showed LOH of 1p; heterozygous deletion of CDKN2A/p 16 was detected as additional alteration in the metastasis and in the intracranial tumor at autopsy. 15015656 2004
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.330 GeneticVariation group BEFREE In order to test this hypothesis further, 101 myxopapillary, conventional, and anaplastic ependymomas (51 spinal and 50 intracranial tumors) were tested for RB and p16 deletions using fluorescence in situ hybridization. 14631364 2004
Entrez Id: 238
Gene Symbol: ALK
ALK
0.320 Biomarker group BEFREE Here, we examined the efficacy of a selective ALK inhibitor alectinib/CH5424802 in preclinical models of intracranial tumors. 25205428 2014
Entrez Id: 238
Gene Symbol: ALK
ALK
0.320 GeneticVariation group BEFREE Key Messages: Next-generation ALK-TKIs are now replacing crizotinib as first-line treatment in ALKi-naïve ALK rearrangement NSCLC patients with brain metastasis, and they alone might have a strong efficacy against intracranial tumors in crizotinib-refractory situations in which occasion radiotherapy might be omitted. 31527380 2019
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.310 AlteredExpression group BEFREE VEGF expression could not be demonstrated in the intracranial tumors by in situ hybridization (ISH) but was clearly present in the perinecrotic regions of subcutaneous E98-FM tumors. 27325687 2016
Entrez Id: 1019
Gene Symbol: CDK4
CDK4
0.310 Biomarker group BEFREE The drug caused rapid regression of Sonic hedgehog (SHH) and <i>MYC</i>-amplified group 3 medulloblastoma subcutaneous tumors and provided a highly significant survival advantage to mice bearing <i>MYC</i>-amplified intracranial tumors.<b>Conclusions:</b> Inhibition of CDK4/6 is potentially a highly effective strategy for the treatment of SHH and <i>MYC</i>-amplified group 3 medulloblastoma.<i></i>. 28637687 2017
Entrez Id: 27436
Gene Symbol: EML4
EML4
0.310 Biomarker group BEFREE We established intracranial tumor implantation models of EML4-ALK-positive NSCLC. 25205428 2014
Entrez Id: 3558
Gene Symbol: IL2
IL2
0.310 AlteredExpression group BEFREE Inability of mitogen-activated lymphocytes obtained from patients with malignant primary intracranial tumors to express high affinity interleukin 2 receptors. 2365829 1990
Entrez Id: 1559
Gene Symbol: CYP2C9
CYP2C9
0.310 GeneticVariation group BEFREE Sixty-two patients with intracranial tumor were genotyped for CYP2C9 and CYP2C19 by real time PCR (TaqMan probe), and subsequently their phenytoin dosage regimens were designed according to the results of previous literature. 27174459 2016
Entrez Id: 3265
Gene Symbol: HRAS
HRAS
0.310 GeneticVariation group BEFREE Rare Ha-ras and c-mos alleles in patients with intracranial tumors. 3352917 1988
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 AlteredExpression group BEFREE In contrast to the loss of epidermal growth factor receptor gene (EGFR) amplification in cell culture, high-level amplification and overexpression of EGFR were retained in intracranial tumors established from two EGFR-amplified flank tumors. 15831234 2005
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 AlteredExpression group BEFREE Quantitative multi-parametric magnetic resonance imaging analyses indicated increased tumor invasion for EGFR<sup>A289D/T/V</sup> mutants, corroborated in mice bearing intracranial tumors expressing EGFR<sup>A289V</sup> and dependent on ERK-mediated expression of matrix metalloproteinase-1. 29990498 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker group BEFREE These alterations together, however, cooperated with ras pathway activation (initiated by expression of mutant H-Ras), but not with phosphatidylinositol 3-kinase pathway activation (initiated by expression of myristoylated Akt) or epidermal growth factor receptor activation, to allow for the formation of intracranial tumors strongly resembling p53/pRb pathway-deficient, telomerase-positive, ras-activated human grade III anaplastic astrocytomas. 11431323 2001
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker group BEFREE As such, ARMS-PCR could play an important role in guiding EGFR-tyrosine kinase inhibitor treatments of intracranial tumors and for diagnosing brain metastases in patients with lung adenocarcinoma. 24994671 2014
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker group BEFREE This comprehensive dataset provides simultaneous insight into pharmacokinetics and pharmacodynamics and indicates that erlotinib delivery to intracranial tumors is insufficient to inhibit EGFR tyrosine kinase signaling. 30464169 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker group BEFREE In this study we have determined the prevalence of amplification of the proto-oncogenes c-erb B1 (= epidermal growth factor receptor gene), c-erb B2 and c-myc in 44 human intracranial tumours (27 gliomas, six metastases to the brain and 11 meningiomas). 2908290 1988
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker group BEFREE In the current study, we examined a panel of serially passaged glioblastoma xenografts, in the context of an intracranial tumor therapy response model, to identify associations between glioblastoma molecular characteristics and tumor sensitivity to the epidermal growth factor receptor (EGFR) kinase inhibitor erlotinib. 17363510 2007
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 Biomarker group BEFREE From the in situ hybridization analysis, we found that MMP-9-specific shRNA (shMMP-9) treatment of mouse intracranial tumors resulted in elevated expression of miR-494. 23728345 2014
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 Biomarker group BEFREE Direct intratumoral injections of plasmid DNA expressing hpRNA for MMP-9 and cathepsin B significantly inhibited established glioma tumor growth and invasion in intracranial tumors in vivo.Further intraperitoneal (i.p.) injections of plasmid DNA expressing hpRNA for MMP-9 and cathepsin B completely regressed pre-established tumors for a long time (4 months) without any indication of these tumor cells. 15122332 2004
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 Biomarker group BEFREE Our results suggest that serum and tissue MMP-9 might provide clinicians additional objective information in intracranial neoplasms. 27757720 2017
Entrez Id: 2152
Gene Symbol: F3
F3
0.020 Biomarker group BEFREE Furthermore, in both fluorescence and single-photon emission computed tomography/computed tomography (SPECT/CT) imaging studies, anti-TF 1849 IgG efficiently accumulated in TF-overexpressing intracranial tumours in mice. 28951589 2017
Entrez Id: 9833
Gene Symbol: MELK
MELK
0.020 Biomarker group BEFREE Here, we demonstrate that MELK depletion by shRNA diminishes the growth of GSC-derived mouse intracranial tumors in vivo, induces glial fibrillary acidic protein (+) glial differentiation of GSCs leading to decreased malignancy of the resulting tumors, and prolongs survival periods of tumor-bearing mice. 23339114 2013
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.020 GeneticVariation group BEFREE Characterization of the genomic landscapes of intracranial tumours has revealed a clear role for the PI3K-AKT-mTOR pathway in tumorigenesis and tumour maintenance of these malignancies, making phosphatidylinositol 3-kinase (PI3K) inhibition a promising therapeutic strategy for these tumours. 30018387 2018
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.020 GeneticVariation group BEFREE Characterization of the genomic landscapes of intracranial tumours has revealed a clear role for the PI3K-AKT-mTOR pathway in tumorigenesis and tumour maintenance of these malignancies, making phosphatidylinositol 3-kinase (PI3K) inhibition a promising therapeutic strategy for these tumours. 30018387 2018