Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.010 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 Biomarker disease BEFREE Molecular characteristics are also important for the diagnosis of several other CNS tumors, such as RELA fusion-positive subtype of ependymoma, atypical teratoid rhabdoid tumor (AT/RT), embryonal tumor with multilayered rosettes, and solitary fibrous tumor/hemangiopericytoma. 31124566 2019
Entrez Id: 4311
Gene Symbol: MME
MME
0.050 Biomarker disease BEFREE The molecular groups showed no significant difference in PFS (4-year estimates: posterior fossa ependymoma group A [PF-EPN-A; 42/54], 71.2% ± 8.3%; supratentorial ependymoma positive for v-rel avian reticuloendotheliosis viral oncogene homolog A [ST-EPN-RELA; 8/54], 83.3% ± 17.0%; and supratentorial ependymoma positive for Yes-associated protein [4/54], 100%, P = 0.22). 30976811 2019
Entrez Id: 340602
Gene Symbol: EZHIP
EZHIP
0.010 AlteredExpression disease BEFREE Recently, we reported CXorf67 overexpression as hallmark of PFA ependymoma and showed that CXorf67 can interact with EZH2 thereby inhibiting polycomb repressive complex 2 (PRC2), but the mechanism of action remained unclear. 30923826 2019
Entrez Id: 2146
Gene Symbol: EZH2
EZH2
0.010 Biomarker disease BEFREE Recently, we reported CXorf67 overexpression as hallmark of PFA ependymoma and showed that CXorf67 can interact with EZH2 thereby inhibiting polycomb repressive complex 2 (PRC2), but the mechanism of action remained unclear. 30923826 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 Biomarker disease BEFREE By DNA methylation profiling, tumors with MN1 or RELA rearrangement clustered with high-grade neuroepithelial tumor with MN1 alteration (HGNET-MN1) and RELA-fusion ependymoma, respectively. 30876455 2019
Entrez Id: 4311
Gene Symbol: MME
MME
0.050 Biomarker disease BEFREE Location of the primary tumor was supratentorial in four patients (all supratentorial <i>RELA</i>-fused ependymoma [ST-EPN-RELA]) and within the posterior fossa in five patients (posterior fossa ependymoma type A [PF-EPN-A], <i>n</i> = 4; posterior fossa ependymoma not further classifiable, <i>n</i> = 1), and multifocal in one patient.All four patients with ST-EPN-RELA were alive in first or second complete remission (CR) 7.5-12.3 years after diagnosis. 30850560 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 Biomarker disease BEFREE We describe a novel RELA-fusion composed by a chimeric transcript C11orf95-LOC-RELA in a supratentorial WHO grade II EPN occurring in a 4-year-old child. 30631904 2019
Entrez Id: 65998
Gene Symbol: C11orf95
C11orf95
0.040 Biomarker disease BEFREE Recent advances in the molecular classification of EPN revealed a supratentorial (ST) ependymoma subgroup characterized by C11orf95-RELA fusion. 30631904 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.020 AlteredExpression disease BEFREE Immune cell subsets and programmed death ligand 1 (PD-L1) expression were measured in 178 classical ependymoma cases by immunohistochemistry using monoclonal antibodies that recognized tumor-infiltrating lymphocyte subsets (TILs; CD3, CD4, CD8, FOXP3, and CD20), tumor-associated macrophages (TAMs; CD68, CD163, AIF1), indoleamine 2,3-dioxygenase (IDO)+ cells and PD-L1-expressing tumor cells. 30483834 2019
Entrez Id: 6622
Gene Symbol: SNCA
SNCA
0.010 Biomarker disease BEFREE A second resection was performed for the mass, which pathological examination revealed an ependymoma with focal anaplasia and additional unusual features including an infiltrative growth pattern and intermixed α-synuclein positivity with electron microscopy finding of LB-like inclusions. 30409527 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 Biomarker disease BEFREE Ependymoma with RELA fusion has been defined as a novel entity of the revised World Health Organization 2016 classification of tumors of the central nervous system (CNS), characterized by fusion transcripts of the RELA gene and consequent pathological activation of the NFkB pathway. 30325077 2019
Entrez Id: 10413
Gene Symbol: YAP1
YAP1
0.030 GeneticVariation disease BEFREE Ependymoma with YAP1-MAMLD1 fusion is a rare, recently described supratentorial neoplasm of childhood, with few cases published so far. 30246434 2019
Entrez Id: 10046
Gene Symbol: MAMLD1
MAMLD1
0.020 GeneticVariation disease BEFREE Ependymoma with YAP1-MAMLD1 fusion is a rare, recently described supratentorial neoplasm of childhood, with few cases published so far. 30246434 2019
Entrez Id: 150094
Gene Symbol: SIK1
SIK1
0.010 AlteredExpression disease BEFREE <i>ROS1</i> fusions in primary glioma and ependymoma were independently corroborated from MSK-IMPACT and Foundation Medicine clinical datasets. 30171048 2018
Entrez Id: 102724428
Gene Symbol: SIK1B
SIK1B
0.010 AlteredExpression disease BEFREE <i>ROS1</i> fusions in primary glioma and ependymoma were independently corroborated from MSK-IMPACT and Foundation Medicine clinical datasets. 30171048 2018
Entrez Id: 6833
Gene Symbol: ABCC8
ABCC8
0.010 Biomarker disease BEFREE SUR1 colocalized most reliably with the neuronal marker, NeuN, in glioblastoma, metastases, and posterior fossa ependymoma samples (p < 0.05). 30079884 2019
Entrez Id: 7291
Gene Symbol: TWIST1
TWIST1
0.010 Biomarker disease BEFREE Immunohistochemistry performed in 60 of the above cases corroborated with gene expression patterns, and immunopositivity for Snail, Slug, Zeb1, and Twist1 was observed in 80%, 80%, 81%, and 63% of all EPNs. 30067950 2018
Entrez Id: 4311
Gene Symbol: MME
MME
0.050 AlteredExpression disease BEFREE Heterogeneity within the PF-EPN-B ependymoma subgroup. 30019219 2018
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 GeneticVariation disease BEFREE A De Novo Mouse Model of C11orf95-RELA Fusion-Driven Ependymoma Identifies Driver Functions in Addition to NF-κB. 29949764 2018
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.100 Biomarker disease BEFREE Their model shows RELA-fusion-based de novo ependymoma tumorigenesis in the forebrain derived from neural stem cells. 29949754 2018
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.020 Biomarker disease BEFREE NF2 and ATRX gene copy number losses on a case of ovarian ependymoma. 29944970 2019
Entrez Id: 5159
Gene Symbol: PDGFRB
PDGFRB
0.010 Biomarker disease BEFREE Axitinib's antitumor mechanism in EPN cell lines involved inhibition of PDGFRα and PDGFRβ and was associated with reduced mitosis-related gene expression and cellular senescence. 29925527 2018
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.010 Biomarker disease BEFREE Axitinib's antitumor mechanism in EPN cell lines involved inhibition of PDGFRα and PDGFRβ and was associated with reduced mitosis-related gene expression and cellular senescence. 29925527 2018
Entrez Id: 5015
Gene Symbol: OTX2
OTX2
0.010 Biomarker disease BEFREE Unlike other ependymomas, PFA-2c tumors express high levels of OTX2, a potential biomarker for this ependymoma subtype with a good prognosis. 29909548 2018