Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23136
Gene Symbol: EPB41L3
EPB41L3
0.010 GeneticVariation disease BEFREE When HPV 16 genes and EPB41L3 methylation status were combined in a logistic regression analysis, a sensitivity of 70.3% and a specificity of 90.9% were observed for the detection of OPC from an oral gargle. 31304592 2020
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.010 AlteredExpression disease BEFREE HPV-negative OPC lines expressed IL-1β mRNA whereas HPV-positive cells did not, and NTF constitutively expressed IL-1R1. 30191960 2019
Entrez Id: 51586
Gene Symbol: MED15
MED15
0.010 Biomarker disease BEFREE Also, this quadruple-methylation marker panel of <i>p16</i><sup>INK4a</sup>, <i>RASSF1A</i>, <i>TIMP3</i>, and <i>PCQAP/MED15</i> TSGs demonstrated excellent diagnostic accuracy in the early detection of OC at 91.7% sensitivity and 92.3% specificity and of OPC at 99.8% sensitivity and 92.1% specificity from healthy controls. 31013839 2019
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.010 GeneticVariation disease BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185 2019
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.010 Biomarker disease BEFREE C-reactive Protein in HPV-Positive and HPV-Negative Oropharyngeal Cancer. 30226795 2019
Entrez Id: 2081
Gene Symbol: ERN1
ERN1
0.010 Biomarker disease BEFREE Interleukin-6 production mediated by the IRE1-XBP1 pathway confers radioresistance in human papillomavirus-negative oropharyngeal carcinoma. 31187548 2019
Entrez Id: 7076
Gene Symbol: TIMP1
TIMP1
0.010 Biomarker disease BEFREE High levels of tissue inhibitor of metalloproteinase-1 (TIMP-1) in the serum are associated with poor prognosis in HPV-negative squamous cell oropharyngeal cancer. 31240326 2019
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.010 GeneticVariation disease BEFREE CASP8 (rs3834129) and CASP3 (rs4647601) polymorphisms in oropharynx cancer risk, tumor cell differentiation, and prognosis in a cohort of the Brazilian population. 31587185 2019
Entrez Id: 100913187
Gene Symbol: APOBEC3A_B
APOBEC3A_B
0.010 Biomarker disease BEFREE These findings suggest that A3A is associated with a good prognosis in ERα-positive OPC, and indicate the prognostic significance of ERα in HPV-positive OPC. 31228270 2019
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.010 Biomarker disease BEFREE Silencing IRE1 and XBP1 increased DNA double-strand break (DSB) and radiation-induced apoptosis, thereby increasing the radiosensitivity of HPV-negative oropharyngeal carcinoma cells. 31187548 2019
Entrez Id: 5591
Gene Symbol: PRKDC
PRKDC
0.010 GeneticVariation disease BEFREE Nonexclusive somatic alterations in KMT2D and PIK3CA were most frequent, with PRKDC alterations occurring at higher frequency when compared with all sequenced HPV+ OPC patients. 30185662 2018
Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
0.010 Biomarker disease BEFREE A differentiated expression of miR-122-5p between oral cancer and oropharynx cancer (AUC of 0.96 p = 0.01) was found: miR-124-3p between larynx and pharynx (AUC = 0.97, p < 0.01) and miR-146a-5p between larynx, oropharynx, and oral cavity (AUC = 0.96, p = 0.01). 30584540 2018
Entrez Id: 692312
Gene Symbol: PPAN-P2RY11
PPAN-P2RY11
0.010 Biomarker disease BEFREE Accuracy of the HPV status site-specific factor 10 (SSF-10) variable for patients with oropharyngeal cancers in the Iowa Cancer Registry, 2010-2014. 29934978 2018
Entrez Id: 2305
Gene Symbol: FOXM1
FOXM1
0.010 AlteredExpression disease BEFREE Collectively, these results indicate that HPV-16 induces FoxM1B in part through GRHL2 transcriptional activity and that elevated FoxM1B level is required for oropharyngeal cancer development. 29443638 2018
Entrez Id: 5133
Gene Symbol: PDCD1
PDCD1
0.010 Biomarker disease BEFREE Infiltration of PD-1-expressing lymphocytes correlates significantly with favourable OS (P = 0.001) and DFS (P = 0.001) in oropharyngeal cancer and hypopharyngeal cancer patients OS (P = 0.007) and DFS (P = 0.001). 29742291 2018
Entrez Id: 574454
Gene Symbol: MIR496
MIR496
0.010 AlteredExpression disease BEFREE Human papillomavirus 16 E6 modulates the expression of miR-496 in oropharyngeal cancer. 29935424 2018
Entrez Id: 56342
Gene Symbol: PPAN
PPAN
0.010 Biomarker disease BEFREE Accuracy of the HPV status site-specific factor 10 (SSF-10) variable for patients with oropharyngeal cancers in the Iowa Cancer Registry, 2010-2014. 29934978 2018
Entrez Id: 79977
Gene Symbol: GRHL2
GRHL2
0.010 AlteredExpression disease BEFREE Collectively, these results indicate that HPV-16 induces FoxM1B in part through GRHL2 transcriptional activity and that elevated FoxM1B level is required for oropharyngeal cancer development. 29443638 2018
Entrez Id: 80316
Gene Symbol: PPP1R2C
PPP1R2C
0.010 Biomarker disease BEFREE Ninety-seven patients enrolled on an IRB-approved prospective registry protocol with stage I-IV OPC underwent pre- and 3-6 month post-RT videofluoroscopy. 29961581 2018
Entrez Id: 406963
Gene Symbol: MIR187
MIR187
0.010 GeneticVariation disease BEFREE A TGF-β1 genetic variant at the miRNA187 binding site significantly modifies risk of HPV16-associated oropharyngeal cancer. 29663347 2018
Entrez Id: 406947
Gene Symbol: MIR155
MIR155
0.010 Biomarker disease BEFREE Validation by real-time PCR confirmed the predictive value of miR-200b and miR-155 in OPSCC, which was absent in hypopharyngeal carcinomas. 28347920 2017
Entrez Id: 2587
Gene Symbol: GALR1
GALR1
0.010 Biomarker disease BEFREE Furthermore, methylation of GAL, GALR1, or GALR2 exhibited the highest association with poor survival (log-rank test, P = 0.018) in patients with HPV-negative oropharyngeal cancers. 27685843 2017
Entrez Id: 960
Gene Symbol: CD44
CD44
0.010 AlteredExpression disease BEFREE Objectives We analyze the relationship between CD44, epidermal growth factor receptor (EGFR), and p16 expression in oral cavity and oropharyngeal cancers in a diverse population. 28397583 2017
Entrez Id: 8811
Gene Symbol: GALR2
GALR2
0.010 Biomarker disease BEFREE Furthermore, methylation of GAL, GALR1, or GALR2 exhibited the highest association with poor survival (log-rank test, P = 0.018) in patients with HPV-negative oropharyngeal cancers. 27685843 2017
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.010 Biomarker disease BEFREE Notch1 Overexpression Correlates to Improved Survival in Cancer of the Oropharynx. 28195818 2017