Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 931
Gene Symbol: MS4A1
MS4A1
0.010 Biomarker disease BEFREE Following a broad panel of immunohistochemical stains, the strong positive staining of the spindle cells for LCA (CD45), CD20, and Bcl-6 confirmed the diagnosis of follicle center cell lymphoma. 31693188 2020
Entrez Id: 54474
Gene Symbol: KRT20
KRT20
0.010 Biomarker disease BEFREE Following a broad panel of immunohistochemical stains, the strong positive staining of the spindle cells for LCA (CD45), CD20, and Bcl-6 confirmed the diagnosis of follicle center cell lymphoma. 31693188 2020
Entrez Id: 4286
Gene Symbol: MITF
MITF
0.010 AlteredExpression disease BEFREE Additionally, rapamycin (a mTOR antagonist) notably attenuated the effects of Rheb on the autophagy, proliferation, apoptosis, and MITF expression in LCA-treated melanoma cells. 31793097 2020
Entrez Id: 6009
Gene Symbol: RHEB
RHEB
0.010 Biomarker disease BEFREE Additionally, rapamycin (a mTOR antagonist) notably attenuated the effects of Rheb on the autophagy, proliferation, apoptosis, and MITF expression in LCA-treated melanoma cells. 31793097 2020
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.010 Biomarker disease BEFREE Following a broad panel of immunohistochemical stains, the strong positive staining of the spindle cells for LCA (CD45), CD20, and Bcl-6 confirmed the diagnosis of follicle center cell lymphoma. 31693188 2020
Entrez Id: 57709
Gene Symbol: SLC7A14
SLC7A14
0.010 GeneticVariation disease BEFREE We identified compound heterozygous missense mutations (c.988G>A, p.G330R; c.1970G>A, p.R657Q) in an autosomal recessive retinitis pigmentosa (RP) case and a homozygous mutation (c.988G>A, p.G330R) in a simplex case with Leber congenital amaurosis (LCA) in the SLC7A14 gene. 30924391 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 Biomarker disease BEFREE The increased production of tumor necrosis factor‑α, interleukin (IL)‑1β, IL‑6 and IL‑8 was significantly reduced in the plasma of LCA‑treated CIA mice compared with the control. 31702035 2019
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 AlteredExpression disease BEFREE The increased production of tumor necrosis factor‑α, interleukin (IL)‑1β, IL‑6 and IL‑8 was significantly reduced in the plasma of LCA‑treated CIA mice compared with the control. 31702035 2019
Entrez Id: 1735
Gene Symbol: DIO3
DIO3
0.010 AlteredExpression disease BEFREE Our work shows that suppressing TH signaling by overexpression of DIO3 preserves cones, supporting that suppressing TH signaling locally in the retina may represent a treatment strategy for LCA management. 29721936 2018
Entrez Id: 2887
Gene Symbol: GRB10
GRB10
0.010 AlteredExpression disease BEFREE Subretinal delivery of AAV5-IRBP/GNAT2-hDIO3 induced robust expression of DIO3 in the mouse retina and significantly reduced the number of TUNEL-positive cells in the cone-dominant LCA model Rpe65 <sup>-/-</sup> /Nrl <sup>-/-</sup> mice. 29721936 2018
Entrez Id: 8878
Gene Symbol: SQSTM1
SQSTM1
0.010 AlteredExpression disease BEFREE The results showed that LCA significantly suppressed arthritis via the activation of SQSTM1 (p62)/nuclear factor-erythroid 2-related factor 2 (Nrf2) signaling in the collagen-induced arthritis (CIA) model of DBA mice. 29233793 2018
Entrez Id: 5949
Gene Symbol: RBP3
RBP3
0.010 AlteredExpression disease BEFREE Subretinal delivery of AAV5-IRBP/GNAT2-hDIO3 induced robust expression of DIO3 in the mouse retina and significantly reduced the number of TUNEL-positive cells in the cone-dominant LCA model Rpe65 <sup>-/-</sup> /Nrl <sup>-/-</sup> mice. 29721936 2018
Entrez Id: 54875
Gene Symbol: CNTLN
CNTLN
0.010 GeneticVariation disease BEFREE Mutations in the cilia-centrosomal protein CEP290 are frequently observed in autosomal recessive childhood blindness disorder Leber congenital amaurosis (LCA). 28679290 2018
Entrez Id: 2780
Gene Symbol: GNAT2
GNAT2
0.010 AlteredExpression disease BEFREE Subretinal delivery of AAV5-IRBP/GNAT2-hDIO3 induced robust expression of DIO3 in the mouse retina and significantly reduced the number of TUNEL-positive cells in the cone-dominant LCA model Rpe65 <sup>-/-</sup> /Nrl <sup>-/-</sup> mice. 29721936 2018
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.010 AlteredExpression disease BEFREE The results showed that LCA significantly suppressed arthritis via the activation of SQSTM1 (p62)/nuclear factor-erythroid 2-related factor 2 (Nrf2) signaling in the collagen-induced arthritis (CIA) model of DBA mice. 29233793 2018
Entrez Id: 8378
Gene Symbol: LOH19CR1
LOH19CR1
0.010 AlteredExpression disease BEFREE The results showed that LCA significantly suppressed arthritis via the activation of SQSTM1 (p62)/nuclear factor-erythroid 2-related factor 2 (Nrf2) signaling in the collagen-induced arthritis (CIA) model of DBA mice. 29233793 2018
Entrez Id: 387700
Gene Symbol: SLC16A12
SLC16A12
0.010 PosttranslationalModification disease BEFREE We further compared the methylation status of 15 DMGs of ADJs to LNM and found only methylation levels of SLC16A12 in ADJs of LCA patients to be significantly higher than that in LNM (17.3% vs. 11.5%, p=0.002). 28540987 2017
Entrez Id: 10383
Gene Symbol: TUBB4B
TUBB4B
0.010 GeneticVariation disease BEFREE Using exome sequencing in a multiplex family and three simplex case subjects with an atypical association of LCA with early-onset hearing loss, we identified two heterozygous mutations affecting Arg391 in β-tubulin 4B isotype-encoding (TUBB4B). 29198720 2017
Entrez Id: 3342
Gene Symbol: HTC2
HTC2
0.010 GeneticVariation disease BEFREE The high resolution rate achieved, equivalent to recent findings using whole exome/genome sequencing, reflects the progression from hypothesis (LCA Panel) to non-hypothesis (RD Panel) testing and, coupled with Array CGH analysis, is a highly effective first-tier test for LCA. 29178642 2017
Entrez Id: 1495
Gene Symbol: CTNNA1
CTNNA1
0.010 GeneticVariation disease BEFREE Eleven deleterious variants, six nonsense and five missense, were identified in seven genes: four LCA-associated genes (CEP290, IQCB1, NMNAT1, and RPGRIP1), one gene responsible for syndromic LCA (ALMS1), and two IRDs-related genes (CTNNA1 and CYP4V2). 28453600 2017
Entrez Id: 285440
Gene Symbol: CYP4V2
CYP4V2
0.010 GeneticVariation disease BEFREE Eleven deleterious variants, six nonsense and five missense, were identified in seven genes: four LCA-associated genes (CEP290, IQCB1, NMNAT1, and RPGRIP1), one gene responsible for syndromic LCA (ALMS1), and two IRDs-related genes (CTNNA1 and CYP4V2). 28453600 2017
Entrez Id: 100996465
Gene Symbol: LCA10
LCA10
0.010 Biomarker disease BEFREE As the most common subtype of Leber congenital amaurosis (LCA), LCA10 is a severe retinal dystrophy caused by mutations in the CEP290 gene. 28109959 2017
Entrez Id: 10045
Gene Symbol: SH2D3A
SH2D3A
0.010 Biomarker disease BEFREE Homozygosity mapping was done using Affymetrix 250K Nsp1 GeneChip in each of LCA, Cone-Rod dystrophy (CRD) and autosomal recessive RP (arRP) families followed by targeted re-sequencing by next generation sequencing (NGS) on Illumina MiSeq. 27383656 2016
Entrez Id: 9468
Gene Symbol: PCYT1B
PCYT1B
0.010 GeneticVariation disease BEFREE Here we report the novel LCA mutations in CCTβ and the impact of chaperon disability by these mutations in cellular biology. 27645772 2016
Entrez Id: 9742
Gene Symbol: IFT140
IFT140
0.010 GeneticVariation disease BEFREE Exome sequencing data analysis led to the identification of IFT140 variants in multiple unrelated non-syndromic LCA and RP cases. 26216056 2015