Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7287
Gene Symbol: TULP1
TULP1
0.140 GeneticVariation disease BEFREE After exclusion of 28 subjects, 169 patients with the diagnosis of LCA and 27 patients with early childhood-onset RP were included in the study because the underlying mutations in AIPL1, GUCY2D, RDH12, RPE65, CRX, CRB1, RPGRIP1, CEP290, LCA5, and TULP1 genes could be identified in this cohort of patients. 20079931 2010
Entrez Id: 7287
Gene Symbol: TULP1
TULP1
0.140 GeneticVariation disease BEFREE Mutations in the gene TULP1 have been associated with two forms of IRDs, early-onset retinitis pigmentosa (RP) and Leber congenital amaurosis (LCA). 26987071 2016
Entrez Id: 7287
Gene Symbol: TULP1
TULP1
0.140 CausalMutation disease CLINVAR Antioxidant effect of aqueous extract of four plants with therapeutic potential on gynecological diseases; Semen persicae, Leonurus cardiaca, Hedyotis diffusa, and Curcuma zedoaria. 29178942 2017
Entrez Id: 7287
Gene Symbol: TULP1
TULP1
0.140 GeneticVariation disease BEFREE Homozygosity mapping was performed with markers flanking 12 loci associated with LCA.The 15 exons of TULP1 were sequenced. 17962469 2007
Entrez Id: 7287
Gene Symbol: TULP1
TULP1
0.140 GeneticVariation disease BEFREE Analysis of variants in the exome sequence data revealed a novel homozygous nonsense mutation (c.1081C > T, p.Arg361*) in TULP1, a gene with roles in photoreceptor function where mutations were previously shown to cause LCA and retinitis pigmentosa. 24547928 2015
Entrez Id: 10383
Gene Symbol: TUBB4B
TUBB4B
0.010 GeneticVariation disease BEFREE Using exome sequencing in a multiplex family and three simplex case subjects with an atypical association of LCA with early-onset hearing loss, we identified two heterozygous mutations affecting Arg391 in β-tubulin 4B isotype-encoding (TUBB4B). 29198720 2017
Entrez Id: 7275
Gene Symbol: TUB
TUB
0.010 Biomarker disease BEFREE These findings prompted us to investigate TUB as a candidate gene for RP and Leber congenital amaurosis (LCA). 16643894 2006
Entrez Id: 943
Gene Symbol: TNFRSF8
TNFRSF8
0.010 Biomarker disease BEFREE H and S-R cells were CD30+, CD15+ (85% of the cases) and LCA (CD45). 8750633 1995
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 Biomarker disease BEFREE The increased production of tumor necrosis factor‑α, interleukin (IL)‑1β, IL‑6 and IL‑8 was significantly reduced in the plasma of LCA‑treated CIA mice compared with the control. 31702035 2019
Entrez Id: 8878
Gene Symbol: SQSTM1
SQSTM1
0.010 AlteredExpression disease BEFREE The results showed that LCA significantly suppressed arthritis via the activation of SQSTM1 (p62)/nuclear factor-erythroid 2-related factor 2 (Nrf2) signaling in the collagen-induced arthritis (CIA) model of DBA mice. 29233793 2018
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 GeneticVariation disease BEFREE Digenic and triallelic mutations of CRB1 and SPATA7 were detected in a family with LCA. 22219627 2011
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 Biomarker disease BEFREE Together, our findings suggest that loss of Spata7 in photoreceptors alone is sufficient to cause photoreceptor degeneration, but its function in the RPE is not required for photoreceptor survival; therefore, loss of Spata7 in photoreceptors alters both rod and cone function and survival, consistent with the clinical phenotypes observed in LCA and RP patients with mutations in SPATA7. 29100828 2018
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 GeneticVariation disease BEFREE SPATA7 mutations were identified in few families segregating non-syndromic LCA (n = 4/134). 20104588 2010
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 GeneticVariation disease BEFREE To investigate the prevalence of sequence variants in the gene SPATA7 in patients with Leber congenital amaurosis (LCA) and autosomal recessive, severe, early-onset retinal dystrophy (EORD) and to delineate the ocular phenotype associated with SPATA7 mutations. 21310915 2011
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 GeneticVariation disease BEFREE These data assign a third locus (LCA3) for LCA to chromosome 14q24. 9799089 1998
Entrez Id: 55812
Gene Symbol: SPATA7
SPATA7
0.060 GeneticVariation disease BEFREE In these Chinese patients, variants in GUCY2D are the most common cause of LCA (16.1% cases), followed by CRB1 (11.5%), RPGRIP1 (8%), RPE65 (5.7%), SPATA7 (4.6%), CEP290 (4.6%), CRX (3.4%), LCA5 (2.3%), MERTK (2.3%), AIPL1 (1.1%), and RDH12 (1.1%). 21602930 2011
Entrez Id: 6652
Gene Symbol: SORD
SORD
0.010 Biomarker disease BEFREE Because some of these genes are involved in the visual cycle, we regarded the retinal pigment epithelium and photoreceptor-specific retinal dehydrogenase (RDH) genes as candidate genes in LCA. 15322982 2004
Entrez Id: 57709
Gene Symbol: SLC7A14
SLC7A14
0.010 GeneticVariation disease BEFREE We identified compound heterozygous missense mutations (c.988G>A, p.G330R; c.1970G>A, p.R657Q) in an autosomal recessive retinitis pigmentosa (RP) case and a homozygous mutation (c.988G>A, p.G330R) in a simplex case with Leber congenital amaurosis (LCA) in the SLC7A14 gene. 30924391 2019
Entrez Id: 79751
Gene Symbol: SLC25A22
SLC25A22
0.010 GeneticVariation disease BEFREE GUCY1*B chickens carry a null mutation in the GC1 gene that disrupts photoreceptor function and causes blindness at hatching, a phenotype that closely matches that observed in humans with LCA1. 21647387 2011
Entrez Id: 387700
Gene Symbol: SLC16A12
SLC16A12
0.010 PosttranslationalModification disease BEFREE We further compared the methylation status of 15 DMGs of ADJs to LNM and found only methylation levels of SLC16A12 in ADJs of LCA patients to be significantly higher than that in LNM (17.3% vs. 11.5%, p=0.002). 28540987 2017
Entrez Id: 10045
Gene Symbol: SH2D3A
SH2D3A
0.010 Biomarker disease BEFREE Homozygosity mapping was done using Affymetrix 250K Nsp1 GeneChip in each of LCA, Cone-Rod dystrophy (CRD) and autosomal recessive RP (arRP) families followed by targeted re-sequencing by next generation sequencing (NGS) on Illumina MiSeq. 27383656 2016
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.010 AlteredExpression disease BEFREE The results showed that LCA significantly suppressed arthritis via the activation of SQSTM1 (p62)/nuclear factor-erythroid 2-related factor 2 (Nrf2) signaling in the collagen-induced arthritis (CIA) model of DBA mice. 29233793 2018
Entrez Id: 57096
Gene Symbol: RPGRIP1
RPGRIP1
0.200 GeneticVariation disease BEFREE We report a novel RPGRIP1 mutation causing LCA in a consanguineous Emirati family. 23278760 2013
Entrez Id: 57096
Gene Symbol: RPGRIP1
RPGRIP1
0.200 Biomarker disease BEFREE Eleven deleterious variants, six nonsense and five missense, were identified in seven genes: four LCA-associated genes (CEP290, IQCB1, NMNAT1, and RPGRIP1), one gene responsible for syndromic LCA (ALMS1), and two IRDs-related genes (CTNNA1 and CYP4V2). 28453600 2017
Entrez Id: 57096
Gene Symbol: RPGRIP1
RPGRIP1
0.200 GeneticVariation disease BEFREE Mutations in the RPGR-interacting protein 1 (RPGRIP1) gene cause recessive Leber congenital amaurosis (LCA), juvenile retinitis pigmentosa (RP) and cone-rod dystrophy. 29203866 2017