Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2891
Gene Symbol: GRIA2
GRIA2
0.010 Biomarker disease BEFREE Western blot testing disclosed a reduced protein level of phosphorylated alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (AMPA-Rs) subunit GluA2 in the cerebella of NPC1<sup>-/-</sup> mice, indicating a disturbance in the internalization of GluA2-containing AMPA-Rs. 31847086 2019
Entrez Id: 2911
Gene Symbol: GRM1
GRM1
0.010 Biomarker disease BEFREE Taken together, our data imply that abnormal internalization of AMPA receptors is a critical mechanism for neuronal dysfunction and the correction of dysfunctional mGluR1/5 is a potential therapeutic strategy for NPC1 disease. 31599924 2019
Entrez Id: 406947
Gene Symbol: MIR155
MIR155
0.010 Biomarker disease BEFREE Here, we propose that miR-155 may be a novel indicator of spleen and liver pathology in NPC1. 30870990 2019
Entrez Id: 7306
Gene Symbol: TYRP1
TYRP1
0.010 Biomarker disease BEFREE In the current study, a) the use of a commercial, highly efficient standard flow-ESI platform for protein biomarker identification is implemented and b) protein biomarkers are identified and evaluated at a terminal time point in the NPC1 null mouse model. 30888112 2019
Entrez Id: 3785
Gene Symbol: KCNQ2
KCNQ2
0.010 Biomarker disease BEFREE The consequence of reduced PtdIns(4,5)P<sub>2</sub> is a parallel decrease in a key regulator of neuronal excitability, the voltage-gated KCNQ2/3 potassium channel, which leads to hyperexcitability in NPC1 disease neurons. 31141688 2019
Entrez Id: 6712
Gene Symbol: SPTBN2
SPTBN2
0.010 AlteredExpression disease BEFREE Western blot revealed reduced EAAT1, EAAT2, EAAT4, and βIII-spectrin levels in NPC1<sup>-/-</sup>mice. 29463856 2018
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.010 AlteredExpression disease BEFREE We suggest that the alterations in Ptc1 expression in cells from NPC1 patients are closely related to NPC1 expression deficit, while the primary cilia alterations observed in NPC1 and U18666A-treated fibroblasts may represent a secondary event derived from a defective metabolic pathway. 28332184 2018
Entrez Id: 9242
Gene Symbol: MSC
MSC
0.010 Biomarker disease BEFREE We also provide evidence that the intranasal administration of hUCB-MSCs is a highly promising alternative to traumatic surgical transplantation for NPC1 patients. 30429460 2018
Entrez Id: 933
Gene Symbol: CD22
CD22
0.010 AlteredExpression disease BEFREE We identified CD22 as a marker of dysregulated microglia in Npc1 mutant mice and subsequently demonstrated that elevated cerebrospinal fluid levels of CD22 in NPC1 patients responds to HPβCD administration. 29617956 2018
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.010 GeneticVariation disease BEFREE The Niemann-Pick type C1 (NPC1) disease is a neurodegenerative lysosomal storage disorder due to mutations in the NPC1 gene, encoding a transmembrane protein related to the Sonic hedgehog (Shh) receptor, Patched, and involved in intracellular trafficking of cholesterol. 28379564 2017
Entrez Id: 124454
Gene Symbol: EARS2
EARS2
0.010 Biomarker disease BEFREE An attenuated function of GluRs in neurons potentially contributes to the progressive neurodegeneration observed in NPC1 and might represent an objective in regard of the development of new therapeutic approaches in NPC1. 28666962 2017
Entrez Id: 331
Gene Symbol: XIAP
XIAP
0.010 GeneticVariation disease BEFREE We investigated bacterial handling and cytokine production of NPC1 monocytes or macrophages in vitro and compared NPC1-associated functional defects to those caused by IBD-associated nucleotide-binding oligomerization domain-containing protein 2 (NOD2) variants or mutations in X-linked inhibitor of apoptosis (XIAP). 26953272 2017
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.010 GeneticVariation disease BEFREE We investigated bacterial handling and cytokine production of NPC1 monocytes or macrophages in vitro and compared NPC1-associated functional defects to those caused by IBD-associated nucleotide-binding oligomerization domain-containing protein 2 (NOD2) variants or mutations in X-linked inhibitor of apoptosis (XIAP). 26953272 2017
Entrez Id: 83985
Gene Symbol: SPNS1
SPNS1
0.010 AlteredExpression disease BEFREE In addition, we found a reduction in endogenous SPNS1 expression in fibroblasts derived from NPC-1 patients compared with normal fibroblasts. 29162837 2017
Entrez Id: 947
Gene Symbol: CD34
CD34
0.010 Biomarker disease BEFREE In this study, we found that the spleen is significantly enlarged in Npc1<sup>-/-</sup> mice, and the results from transmission electron microscopy examination and immunostaining using three different TCs markers, c-Kit, CD34 and Vimentin revealed significantly increased splenic TCs in Npc1<sup>-/-</sup> mice. 27860245 2017
Entrez Id: 64127
Gene Symbol: NOD2
NOD2
0.010 Biomarker disease BEFREE Mutations in NPC1 cause impaired autophagy due to defective autophagosome function that abolishes NOD2-mediated bacterial handling in vitro similar to variants in NOD2 or XIAP deficiency. 26953272 2017
Entrez Id: 100505887
Gene Symbol: LINC01672
LINC01672
0.010 GeneticVariation disease BEFREE Using this approach, we were able to identify NPC1 disease with 91% accuracy confirming that there are significant differences in the NMR plasma metabolic profiles of NPC1 patients when compared to healthy controls. 28740230 2017
Entrez Id: 9709
Gene Symbol: HERPUD1
HERPUD1
0.010 Biomarker disease BEFREE Furthermore, U18666A, an inhibitor of NPC1 function, was used to block cholesterol trafficking to imitate the NPC1 defect in SUP-B15/S cells, leading to higher NPC1 expression, stronger filipin fluorescence, lower intracellular IM concentrations and greater resistance against IM. 26818574 2016
Entrez Id: 6616
Gene Symbol: SNAP25
SNAP25
0.010 Biomarker disease BEFREE Furthermore, U18666A, an inhibitor of NPC1 function, was used to block cholesterol trafficking to imitate the NPC1 defect in SUP-B15/S cells, leading to higher NPC1 expression, stronger filipin fluorescence, lower intracellular IM concentrations and greater resistance against IM. 26818574 2016
Entrez Id: 11035
Gene Symbol: RIPK3
RIPK3
0.010 AlteredExpression disease BEFREE We report increased expression of RIP1 and RIP3 in NPC1 fibroblasts, NPC1 iPS cell-derived neuronal precursors, and in cerebellar tissue from both NPC1 mice and patients. 26986514 2016
Entrez Id: 1555
Gene Symbol: CYP2B6
CYP2B6
0.010 Biomarker disease BEFREE While evaluating potential small molecule therapies in Npc1-/- mice, we observed a consistent pattern of toxicity associated with drugs metabolised by the cytochrome P450 system, suggesting a potential drug metabolism defect in NPC1 disease. 27019000 2016
Entrez Id: 23164
Gene Symbol: MPRIP
MPRIP
0.010 AlteredExpression disease BEFREE We report increased expression of RIP1 and RIP3 in NPC1 fibroblasts, NPC1 iPS cell-derived neuronal precursors, and in cerebellar tissue from both NPC1 mice and patients. 26986514 2016
Entrez Id: 2170
Gene Symbol: FABP3
FABP3
0.010 Biomarker disease BEFREE Translating our findings from the murine model to patients, we confirm altered expression of glutathione s-transferase α, superoxide dismutase, and FABP3 in cerebrospinal fluid of NPC1 patients relative to pediatric controls. 23144710 2012
Entrez Id: 4137
Gene Symbol: MAPT
MAPT
0.010 GeneticVariation disease BEFREE Thus, we examined apolipoprotein E (ApoE) and microtubule-associated protein tau (MAPT) polymorphisms in a cohort of 15 NPC1 patients with well characterized longitudinal disease progression. 23023945 2012
Entrez Id: 348
Gene Symbol: APOE
APOE
0.010 Biomarker disease BEFREE These data support the hypothesis that ApoE may play a role in modulating NPC1 neuropathology. 23023945 2012