Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8239
Gene Symbol: USP9X
USP9X
0.010 GeneticVariation group BEFREE We also verified aberrant splicing of key genes USP9X, USP24 (deubiquitinating enzymes), LUC7L2 (splice factor) and EED (PRC2 component) in MDS harboring small deletions of SRSF2. 31680297 2020
Entrez Id: 8809
Gene Symbol: IL18R1
IL18R1
0.010 AlteredExpression group BEFREE Evidently, overexpression of naturally occurring cytokine receptor alternate isoforms are observed in multiple myeloid diseases such as myelodysplastic syndromes (MDS), acute myeloid leukemia (AML), and polycythemia vera (PV). 31816579 2020
Entrez Id: 8726
Gene Symbol: EED
EED
0.010 Biomarker group BEFREE We also verified aberrant splicing of key genes USP9X, USP24 (deubiquitinating enzymes), LUC7L2 (splice factor) and EED (PRC2 component) in MDS harboring small deletions of SRSF2. 31680297 2020
Entrez Id: 11035
Gene Symbol: RIPK3
RIPK3
0.010 Biomarker group BEFREE This data also indicate that RIPK1/RIPK3/MLKL are potential therapeutic targets in MDS. 31719677 2020
Entrez Id: 23358
Gene Symbol: USP24
USP24
0.010 GeneticVariation group BEFREE We also verified aberrant splicing of key genes USP9X, USP24 (deubiquitinating enzymes), LUC7L2 (splice factor) and EED (PRC2 component) in MDS harboring small deletions of SRSF2. 31680297 2020
Entrez Id: 197259
Gene Symbol: MLKL
MLKL
0.010 Biomarker group BEFREE This data also indicate that RIPK1/RIPK3/MLKL are potential therapeutic targets in MDS. 31719677 2020
Entrez Id: 8320
Gene Symbol: EOMES
EOMES
0.010 Biomarker group BEFREE Expression of Notch1, EOMES (associated with perforin and granzyme B secretion), p-mTOR and p-AKT (associated with cell proliferation) was decreased in CD8<sup>+</sup> T cells from MDS after co-culture with excess exogenous Gal-9. 31756785 2020
Entrez Id: 10148
Gene Symbol: EBI3
EBI3
0.010 AlteredExpression group BEFREE Evidently, overexpression of naturally occurring cytokine receptor alternate isoforms are observed in multiple myeloid diseases such as myelodysplastic syndromes (MDS), acute myeloid leukemia (AML), and polycythemia vera (PV). 31816579 2020
Entrez Id: 1132
Gene Symbol: CHRM4
CHRM4
0.010 Biomarker group BEFREE Here, we found that the muscarinic acetylcholine receptor, cholinergic receptor, muscarinic 4 (CHRM4), pathway regulates BFU-E self-renewal and that pharmacological inhibition of CHRM4 corrects anemias of myelodysplastic syndrome (MDS), aging, and hemolysis. 31554738 2019
Entrez Id: 6996
Gene Symbol: TDG
TDG
0.010 GeneticVariation group BEFREE In the screening cohort, 6 candidate SNPs were associated with the tendency to develop MDS: rs4135113 (TDG, p = 0.03), rs12917 (MGMT, p = 0.003), rs2230641 (CCNH, p = 0.01), rs2228529 and rs2228526 (ERCC6, p = 0.04 and p = 0.03), and rs1799977 (MLH1, p = 0.04). 30861523 2019
Entrez Id: 3146
Gene Symbol: HMGB1
HMGB1
0.010 Biomarker group BEFREE We quantified HMGB1 in an MDS cell line MDS-L and in primary MDS cells compared with nonmalignant hematopoietic cells. 30952643 2019
Entrez Id: 641518
Gene Symbol: LEF1-AS1
LEF1-AS1
0.010 AlteredExpression group BEFREE Additionally, bone marrow cells from myelodysplastic syndrome (n=12) and acute myeloid malignancy patients (n=28) expressed significantly reduced levels of LEF1-AS1 compared to healthy controls (n=15). 30770626 2019
Entrez Id: 6943
Gene Symbol: TCF21
TCF21
0.010 Biomarker group BEFREE Promoter methylation of the candidate tumor suppressor gene TCF21 in myelodysplastic syndrome and acute myeloid leukemia. 31312357 2019
Entrez Id: 6098
Gene Symbol: ROS1
ROS1
0.010 Biomarker group BEFREE DAC also induced reactive oxygen species (ROS) generation in MSCs derived from MDSs patients (*P = 0.038). 31542488 2019
Entrez Id: 4035
Gene Symbol: LRP1
LRP1
0.010 Biomarker group BEFREE These data suggest that TP53-mutated Myelodysplastic syndromes / acute myeloid leukemia may be better targeted by the addition of APR-246 to conventional treatments. 31488557 2019
Entrez Id: 6789
Gene Symbol: STK4
STK4
0.010 AlteredExpression group BEFREE Through assessment of patient gene expression, we have identified STK4 (encoding Hippo kinase MST1) as a 20q gene that is downregulated below haploinsufficient amounts in myelodysplastic syndrome (MDS) and myeloproliferative neoplasm (MPN). 31434702 2019
Entrez Id: 121340
Gene Symbol: SP7
SP7
0.010 AlteredExpression group BEFREE The results revealed that proliferation, apoptosis and the mRNA expression levels of RUNX2 and SP7 in MDS-MSCs did not significantly change following treatment with decitabine compared with control MDS-MSCs. 31611955 2019
Entrez Id: 622
Gene Symbol: BDH1
BDH1
0.010 Biomarker group BEFREE The BDH index is more sensitive and specific than loss of blast heterogeneity or decrease in hematogones for detecting MDS in bone marrow samples and may be useful in clinical practice. 30854558 2019
Entrez Id: 51592
Gene Symbol: TRIM33
TRIM33
0.010 Biomarker group BEFREE Here, we present an unusual case of anti-TIF1gamma antibody-positive DM that ultimately lead to the diagnosis of myelodysplastic syndrome (MDS). 31723534 2019
Entrez Id: 5321
Gene Symbol: PLA2G4A
PLA2G4A
0.010 GeneticVariation group BEFREE Higher PLA2G4A expression is associated with mutations in NRAS (P < .001), RUNX1 (P = .012), ASXL1 (P = .007), and EZH2 (P = .038), all of which are known to contribute to MDS development. 31738830 2019
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.010 Biomarker group BEFREE In this study we used next-generation sequencing of immunoglobulin heavy chain (<i>IGH)</i> and T-cell receptor beta (<i>TRB</i>) rearrangements in bone marrow-residing and peripheral blood-circulating lymphocytes of patients with del(5q) myelodysplastic syndromes to assess the immune architecture and track adaptive immune responses during treatment with lenalidomide. 30655375 2019
Entrez Id: 406936
Gene Symbol: MIR144
MIR144
0.010 AlteredExpression group BEFREE We observed significantly diminished expression of AKAP12 in MDS samples. miR-144 directly bound to AKAP12 3'UTR and reduced its expression in hematopoietic cells. 31809872 2019
Entrez Id: 407008
Gene Symbol: MIR223
MIR223
0.010 Biomarker group BEFREE With regard to the prognosis, the levels of miR-27a-3p, miR-150-5p, miR-199a-5p, miR-223-3p and miR-451a were reduced in higher-risk MDS. 28485163 2019
Entrez Id: 151176
Gene Symbol: ERFE
ERFE
0.010 GeneticVariation group BEFREE Thus, hepcidin suppression by a variant ERFE is likely responsible for the increased iron loading in patients with <i>SF3B1</i>-mutated MDS, suggesting that ERFE could be targeted to prevent iron-mediated toxicity. 31292266 2019
Entrez Id: 114803
Gene Symbol: MYSM1
MYSM1
0.010 GeneticVariation group BEFREE We report a case of NP associated with myelodysplasia in a child with MYSM1 deficiency, a newly described syndrome with primary immunodeficiency (PI), bone marrow failure, and developmental aberrations. 30746751 2019