Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.500 GeneticVariation group BEFREE While TP53-mutated MDS patients initially respond well to HMA, their duration of response is significantly shorter than WT patients. 26871476 2016
Entrez Id: 947
Gene Symbol: CD34
CD34
0.100 AlteredExpression group BEFREE While CD34 stem/progenitor cells do not express TRAIL-receptors and are protected from TRAIL-induced apoptosis, accumulating evidence points to a role for elevated expression/release of TRAIL at the bone marrow level in the pathophysiology of aplastic anemia, Fanconi anemia, and myelodysplastic syndromes. 18043245 2008
Entrez Id: 2122
Gene Symbol: MECOM
MECOM
0.400 Biomarker group BEFREE Whereas this interaction could provide the basis for the erythroid defects in EVI1-positive MDS, it does not explain the alteration of myeloid differentiation. 19208846 2009
Entrez Id: 1236
Gene Symbol: CCR7
CCR7
0.100 Biomarker group BEFREE Whereas this interaction could provide the basis for the erythroid defects in EVI1-positive MDS, it does not explain the alteration of myeloid differentiation. 19208846 2009
Entrez Id: 1050
Gene Symbol: CEBPA
CEBPA
0.400 AlteredExpression group BEFREE Whereas multiple previous MDS genetic screens failed to identify altered expression of the gene encoding the myeloid transcription factor CEBPA, stage-specific and extensive down-regulation of CEBPA was specifically observed in MDS progenitors. 17616640 2007
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.500 AlteredExpression group BEFREE Whereas loss of p53 function promotes leukemia and lymphoma development in humans and mice, increased p53 activity inhibits hematopoietic stem cell function and results in myelodysplasia. 23018641 2012
Entrez Id: 11200
Gene Symbol: CHEK2
CHEK2
0.060 Biomarker group BEFREE Whereas intermediate-1 MDS samples contained as little P-Chk-1 and P-Chk-2 as healthy controls, staining for both checkpoint kinases increased in intermediate-2 and high-risk MDS, yet declined to near-to-background levels in AML samples. 19398952 2009
Entrez Id: 1111
Gene Symbol: CHEK1
CHEK1
0.010 Biomarker group BEFREE Whereas intermediate-1 MDS samples contained as little P-Chk-1 and P-Chk-2 as healthy controls, staining for both checkpoint kinases increased in intermediate-2 and high-risk MDS, yet declined to near-to-background levels in AML samples. 19398952 2009
Entrez Id: 4684
Gene Symbol: NCAM1
NCAM1
0.040 Biomarker group BEFREE When adding CD56 or CD7 labeling to the Ogata score, sensitivity rose to 66% for low-risk myelodysplastic syndromes, to 89% for myelodysplastic/myeloproliferative neoplasms and to 97% for refractory anemia with excess of blasts. 25637056 2015
Entrez Id: 2187
Gene Symbol: FANCB
FANCB
0.500 GeneticVariation group BEFREE When FAB subtypes at the time of study were used in the analysis, the incidence of (p15INK4B) methylation in each risk group of MDS remained stable throughout the course: 0% for low-risk MDS [refractory anaemia (RA) and RA with ring sideroblasts] and from 23% at diagnosis to 30% for high-risk MDS [RA with excess of blasts (RAEB), RAEB in transformation and chronic myelomonocytic leukaemia] respectively. 11167795 2001
Entrez Id: 1535
Gene Symbol: CYBA
CYBA
0.010 PosttranslationalModification group BEFREE Western blot analysis demonstrated a decreased protein expression level of the flavocytochrome b558 subunits gp91phox and p22phox in neutrophils from MDS patients. 12962720 2003
Entrez Id: 4928
Gene Symbol: NUP98
NUP98
0.100 Biomarker group BEFREE We used the NUP98-HOXD13 (NHD13) murine model for MDS to study HSCT in a pre-clinical setting. 28953912 2017
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.200 GeneticVariation group BEFREE We used polymerase chain reaction (PCR), differential oligonucleotide hybridization and direct DNA sequencing to retrospectively analyze the N-ras gene of blast cells from the same patient (a) at time of diagnosis of MDS, (b) after the patient had developed AML. 2183160 1990
Entrez Id: 5277
Gene Symbol: PIGA
PIGA
0.170 GeneticVariation group BEFREE We used peripheral blood flow cytometry to identify glycosylphosphatidylinositol-anchor deficient blood cells, a proaerolysin-resistant colony forming cell assay to select glycosylphosphatidylinositol-anchor deficient progenitor cells, a novel T-lymphocyte enrichment culture assay with proaerolysin selection to expand glycosylphosphatidylinositol-anchor deficient T lymphocytes, and PIG-A gene sequencing assays to identify and analyze PIG-A mutations in patients with aplastic anemia and myelodysplastic syndromes. 22315493 2012
Entrez Id: 947
Gene Symbol: CD34
CD34
0.100 Biomarker group BEFREE We used immunofluorescence staining of γH2AX and 53BP1 for analyzing DNA double-strand breaks (DSB) in MDS and AML cell lines, in CD34+ selected cells of normal and MDS bone marrow (including three cases of chronic myelomonocytic leukemias) and in blasts of AML bone marrow. 28359030 2017
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE We used genome-editing technology to disrupt the zebrafish Tet2 catalytic domain. tet2(m/m) (homozygous for the mutation) zebrafish exhibited normal embryonic and larval hematopoiesis but developed progressive clonal myelodysplasia as they aged, culminating in myelodysplastic syndromes (MDS) at 24 months of age, with dysplasia of myeloid progenitor cells and anemia with abnormal circulating erythrocytes. 25512612 2015
Entrez Id: 929
Gene Symbol: CD14
CD14
0.060 Biomarker group BEFREE We used gene expression profiling to study the effect of lenalidomide therapy in peripheral blood CD14(+) monocytes of 6 patients with del(5q) and MDS. 22608605 2012
Entrez Id: 4869
Gene Symbol: NPM1
NPM1
0.100 Biomarker group BEFREE We used flow cytometry (FC), an emerging technique for assessing dysplasia, to investigate MLD in NPM1⁺ AML by an immunophenotypic score (IPS), a technique previously adopted in myelodysplastic syndrome. 26101160 2015
Entrez Id: 54187
Gene Symbol: NANS
NANS
0.010 Biomarker group BEFREE We used SAS v.9.3 (SAS Institute, Cary, NC) to calculate odds ratios (OR) and 95% confidence intervals (CI) overall and stratified by MDS subtype and IPSS-R risk category. 27121678 2016
Entrez Id: 6302
Gene Symbol: TSPAN31
TSPAN31
0.010 Biomarker group BEFREE We used SAS v.9.3 (SAS Institute, Cary, NC) to calculate odds ratios (OR) and 95% confidence intervals (CI) overall and stratified by MDS subtype and IPSS-R risk category. 27121678 2016
Entrez Id: 51185
Gene Symbol: CRBN
CRBN
0.030 Biomarker group BEFREE We use the <i>Crbn</i><sup>I391V</sup> model to demonstrate that the in vivo therapeutic activity of lenalidomide in del(5q) myelodysplastic syndrome can be explained by heterozygous expression of Ck1α in del(5q) cells. 30064974 2018
Entrez Id: 2322
Gene Symbol: FLT3
FLT3
0.100 Biomarker group BEFREE We treated 20 patients, each with mutant FLT3 relapsed/refractory AML or high-grade myelodysplastic syndrome and not believed to be candidates for chemotherapy, with an FLT3 tyrosine kinase inhibitor, PKC412 (N-benzoylstaurosporine), at a dose of 75 mg 3 times daily by mouth. 15345597 2005
Entrez Id: 1991
Gene Symbol: ELANE
ELANE
0.120 GeneticVariation group BEFREE We therefore screened the WAS gene in 14 young SCN males with wild-type ELA2 and identified 2 with novel mutations, one who presented with myelodysplasia (Ile294Thr) and the other with classic SCN (Ser270Pro). 16804117 2006
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.070 AlteredExpression group BEFREE We therefore propose that SALL4 plays a critical role in the pathogenesis of MDS by causing the aberrant activation of the Wnt/beta-catenin pathway. 19781444 2009
Entrez Id: 57167
Gene Symbol: SALL4
SALL4
0.050 Biomarker group BEFREE We therefore propose that SALL4 plays a critical role in the pathogenesis of MDS by causing the aberrant activation of the Wnt/beta-catenin pathway. 19781444 2009