Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 Biomarker disease BEFREE Melanocytic nevi and low-grade atypical melanocytic nevi revealed sporadic junctional CDKN2A microsatellite abnormalities and no significant topographic kinetic differences. 21336261 2011
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 Biomarker disease BEFREE Melanocytic nevi excised during B-Raf proto-oncogene (BRAF) inhibitor therapy: A study of 19 lesions from 10 patients. 26190239 2015
Entrez Id: 3965
Gene Symbol: LGALS9
LGALS9
0.010 AlteredExpression disease BEFREE Galectin-9 protein was strongly and homogeneously expressed in melanocytic nevi, but down-regulated in melanoma cells especially in metastatic lesions. 12115481 2002
Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
0.010 AlteredExpression disease BEFREE ASC expression was absent or reduced in 7 of 12 (58.3%) cell lines and in 20 of 32 (62.5%) melanoma tissues, whereas all 18 benign melanocytic nevi showed intensive ASC expression. 12949795 2003
Entrez Id: 412
Gene Symbol: STS
STS
0.010 AlteredExpression disease BEFREE ASC expression was absent or reduced in 7 of 12 (58.3%) cell lines and in 20 of 32 (62.5%) melanoma tissues, whereas all 18 benign melanocytic nevi showed intensive ASC expression. 12949795 2003
Entrez Id: 3312
Gene Symbol: HSPA8
HSPA8
0.010 Biomarker disease BEFREE HSP73 immunostaining was stronger in melanoma metastases when compared with acquired melanocytic nevi which was statistically significant. 15254721 2004
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE BRAF mutations are common events in a variety of melanocytic nevi and primary cutaneous melanomas. 16799476 2006
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE BRAF and NRAS mutations in melanoma and melanocytic nevi. 16845322 2006
Entrez Id: 9846
Gene Symbol: GAB2
GAB2
0.010 AlteredExpression disease BEFREE Gab2 protein expression correlated with clinical melanoma progression, and higher levels of expression were seen in metastatic melanomas compared with primary melanoma and melanocytic nevi. 19342374 2009
Entrez Id: 706
Gene Symbol: TSPO
TSPO
0.010 AlteredExpression disease BEFREE TSPO expression in melanoma and melanocytic nevi was analyzed by immunohistochemistry and real-time PCR, and TSPO levels were correlated to the invasiveness of the tumor. 23080515 2012
Entrez Id: 5579
Gene Symbol: PRKCB
PRKCB
0.010 AlteredExpression disease BEFREE PKCβ showed enhanced expression in human primary melanomas and distant metastases as compared with benign melanocytic nevi. 24406113 2014
Entrez Id: 4162
Gene Symbol: MCAM
MCAM
0.010 AlteredExpression disease BEFREE MUC18 is expressed only sporadically in benign melanocytic nevi and thin primary melanomas that have a low probability of metastasizing. 2602381 1989
Entrez Id: 1845
Gene Symbol: DUSP3
DUSP3
0.010 Biomarker disease BEFREE DUSP3, which regulates cellular senescence, was identified as one of the disease discriminative genes between DNs and common melanocytic nevi by three independent statistical approaches and its altered expression was confirmed by immunohistochemistry. 27377700 2016
Entrez Id: 7015
Gene Symbol: TERT
TERT
0.010 GeneticVariation disease BEFREE Telomerase reverse transcriptase (TERT) promoter mutations are commonly found in malignant melanomas but rare in melanocytic nevi. 30211730 2019
Entrez Id: 358
Gene Symbol: AQP1
AQP1
0.010 Biomarker disease BEFREE AQP1 showed strong labeling in 100% of benign common melanocytic nevi. 31305898 2019
Entrez Id: 360
Gene Symbol: AQP3
AQP3
0.010 Biomarker disease BEFREE AQP3 showed strong labeling in 100% of melanocytic nevi, 100% of atypical melanocytic nevi, and 100% of melanomas. 31305898 2019
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.040 AlteredExpression disease BEFREE bcl-2 protein expression in cutaneous malignant melanoma and benign melanocytic nevi. 7695015 1995
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE A prime example is mutant BRAF, which drives OIS in melanocytic nevi. 24703243 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE A similar high frequency (62-72%) of BRAF oncogenic mutations was identified in melanocytic nevi, VGP, metastatic melanomas, and melanoma cell lines [H. Davies et al., Nature (Lond.), 417: 949-954, 2002; P. M. Pollock et al., Nat. 12873977 2003
Entrez Id: 8190
Gene Symbol: MIA
MIA
0.010 GeneticVariation disease BEFREE A total of 295 PBMC samples isolated from 166 patients with melanocytic tumors were tested with the MIA RT-PCR-ELISA: (a) 58 patients (99 samples) with malignant melanomas in stage I; (b) 49 patients (65 samples) with malignant melanomas in stage II; and (c) 47 patients (116 samples) with metastasized melanomas (stages III and IV), with an additional 12 patients (15 samples) with benign melanocytic nevi. 10353744 1999
Entrez Id: 10765
Gene Symbol: KDM5B
KDM5B
0.020 AlteredExpression disease BEFREE Accordingly, they found RBP2-H1 expression in microdissected tissue samples from benign melanocytic nevi (n = 10). 10616211 1999
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE Acquired melanocytic nevi harbor oncogenic mutations in BRAF, which is the predominant oncogene associated with melanoma. 26300491 2015
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.010 Biomarker disease BEFREE All carcinoid tumors and melanocytic nevi showed moderate or strong immunostaining for PTEN. 12051632 2002
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 Biomarker disease BEFREE All the childhood melanoma cases were associated with loss of p16 without any correlation with their Breslow thickness whereas all the Spitz nevi and benign melanocytic nevi had strong positive nuclear and cytoplasmic expression of p16 staining. 21550132 2011
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.030 Biomarker disease BEFREE All the childhood melanoma cases were associated with loss of p16 without any correlation with their Breslow thickness whereas all the Spitz nevi and benign melanocytic nevi had strong positive nuclear and cytoplasmic expression of p16 staining. 21550132 2011