Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6363
Gene Symbol: CCL19
CCL19
0.010 Biomarker disease BEFREE Conversely in LN tissue, CCR6+ T cells were infrequent, and there was a statistically significant association of cell-associated HIV DNA and RNA with CCL19, CCL21, and CXCL13 chemokines. 31796951 2020
Entrez Id: 9719
Gene Symbol: ADAMTSL2
ADAMTSL2
0.010 Biomarker disease BEFREE Here we detail the protocols involved in the molecular cloning of ADAMTSL2 and ADAMTSL4 into the human immunodeficiency virus (HIV)-derived pCDH lentiviral system. 31463909 2020
Entrez Id: 54507
Gene Symbol: ADAMTSL4
ADAMTSL4
0.010 Biomarker disease BEFREE Here we detail the protocols involved in the molecular cloning of ADAMTSL2 and ADAMTSL4 into the human immunodeficiency virus (HIV)-derived pCDH lentiviral system. 31463909 2020
Entrez Id: 64919
Gene Symbol: BCL11B
BCL11B
0.010 AlteredExpression disease BEFREE Increased expression of BCL11B and its recruited chromatin remodeling factors during highly active antiretroviral therapy synergistically represses the transcription of human immunodeficiency virus type 1 and is associated with residual immune activation. 31828511 2020
Entrez Id: 942
Gene Symbol: CD86
CD86
0.010 AlteredExpression disease BEFREE Nonclassical monocytes (CD14+, CD16++), interleukin (IL)-1β production, and expression of CD40 and CD86 were lower among ART-treated HIV-infected adults relative to age-matched HIV-negative adults (P = .01, P = .01, and P = .02, respectively). 31323092 2019
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.010 Biomarker disease BEFREE Osteopontin counters human immunodeficiency virus type 1-induced impairment of neurite growth through mammalian target of rapamycin and beta-integrin signaling pathways. 30758811 2019
Entrez Id: 6404
Gene Symbol: SELPLG
SELPLG
0.010 AlteredExpression disease BEFREE We further show that PSGL-1 knockdown can significantly abolish the anti-HIV activity of interferon-γ in primary CD4<sup>+</sup> T cells. 30833724 2019
Entrez Id: 10666
Gene Symbol: CD226
CD226
0.010 Biomarker disease BEFREE In this review, we overview the molecular strategies adopted by viruses, specifically cytomegalovirus (CMV), human immunodeficiency virus (HIV-1), herpes virus (HSV), Epstein-Barr virus (EBV) and hepatitis C virus (HCV), aiming to evade NK cell-mediated surveillance, with a special focus on the modulation of DNAM-1 activating receptor and its ligands in various phases of the viral life cycle. 31366013 2019
Entrez Id: 5595
Gene Symbol: MAPK3
MAPK3
0.010 AlteredExpression disease BEFREE Furthermore, activation of the TREM1 signaling pathway, with a targeted agonist, increased HIV or HCV-mediated inflammatory responses in macrophages due to enhanced activation of the ERK1/2 signaling cascade. 31260499 2019
Entrez Id: 151888
Gene Symbol: BTLA
BTLA
0.010 Biomarker disease BEFREE Together, these data provide novel evidence that the majority of Mtb-specific CD4 T cells do not co-express multiple inhibitory receptors, regardless of HIV infection status; moreover, they highlight a previously unrecognized role of BTLA expression on Mtb-specific CD4 T cells that could be further explored as a potential biomarker of Mtb infection status, particularly in people living with HIV, the population at greatest risk for development of active TB disease. 31497018 2019
Entrez Id: 5467
Gene Symbol: PPARD
PPARD
0.010 Biomarker disease BEFREE In addition, FBI-1 was positively correlated with numerous biological factors, including p73 [Spearman's correlation coefficient (r<sub>s</sub>)=0.332, P=0.007], lysyl oxidase (r<sub>s</sub>=0.234, P=0.043), Wrap53 (r<sub>s</sub>=-0.425, P=0.0002) and peroxisome proliferator-activated receptor δ (r<sub>s</sub>=-0.294, P=0.026). 31612040 2019
Entrez Id: 6304
Gene Symbol: SATB1
SATB1
0.010 Biomarker disease BEFREE This study revealed four key findings for HIV-positive patients: <i>1</i>) coexpression of the CD142 coagulation marker together with immune activation on both CD4<sup>+</sup> and CD8<sup>+</sup> T cells during chronic infection stages; <i>2</i>) Treg cell activation and upregulated GARP and SATB-1 contributing to Treg dysfunction in chronic HIV; <i>3</i>) proatherogenic monocyte subset expansion with significant correlation between T-cell activation and macrophage activation (marker: CD163); and <i>4</i>) significant correlation between immune activation and lipid subclasses, revealing crucial changes that can be missed by traditional lipid marker assessments (LDL and HDL). 30768357 2019
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.010 Biomarker disease BEFREE Our review did not reveal clear interactions between HIV and NCC. 31189001 2019
Entrez Id: 80339
Gene Symbol: PNPLA3
PNPLA3
0.010 Biomarker disease BEFREE Overall, one-third of HIV/HCV-coinfected patients are affected by HS with PI-based ART and PNPLA3 impacting on HS prevalence. 31067123 2019
Entrez Id: 9208
Gene Symbol: LRRFIP1
LRRFIP1
0.010 Biomarker disease BEFREE LRRFIP1/GCF2 was also cloned as a double stranded RNA (dsRNA)-binding protein to trans-activation responsive region (TAR) RNA of Human Immunodeficiency Virus-1 (HIV-1), termed as TAR RNA interacting protein (TRIP), and as a binding protein to the Leucine Rich Repeat (LRR) of Flightless-1(Fli-1), termed as Flightless-1 LRR associated protein 1 (FLAP1) and LRR domain of Flightless-1 interacting Protein 1 (LRRFIP1). 30709060 2019
Entrez Id: 10777
Gene Symbol: ARPP21
ARPP21
0.010 Biomarker disease BEFREE We found an inverted U-shape trend of HIV incidence over time with a peak of 6.4 per 100 PY in quarter 2/2011 ( p < 0.01) (Poisson with RCS function, p = 0.001). 30626283 2019
Entrez Id: 23216
Gene Symbol: TBC1D1
TBC1D1
0.010 GeneticVariation disease BEFREE A Phase I HIV-1 prophylactic vaccine trial sponsored by the International AIDS Vaccine Initiative (IAVI) was conducted in India in 2009.The trial tested a HIV-1 subtype C vaccine in a prime-boost regimen, comprising of a DNA prime (ADVAX) and Modified Vaccine Ankara (MVA) (TBC-M4) boost. 30921340 2019
Entrez Id: 4233
Gene Symbol: MET
MET
0.010 GeneticVariation disease BEFREE Study 206216 (NCT02666001) was a Phase I, open-label study, assessing the effect of FTR 600 mg (extended-release formulation) twice daily on pharmacokinetics of MET or BUP and norBUP, in non-HIV-infected participants on stable maintenance therapy with MET (40-120 mg; n = 16) or BUP plus naloxone (8-24 mg plus 2-6 mg; n = 16); pharmacodynamic response was assessed using standard opioid rating scales. 30980734 2019
Entrez Id: 6050
Gene Symbol: RNH1
RNH1
0.010 Biomarker disease BEFREE Although the viral reservoir size was not significantly reduced by PRI-724 treatment alone, we demonstrate the potential to pharmacologically modulate the proliferation of memory CD4<sup>+</sup> T cells as a strategy to limit HIV persistence. 31619550 2019
Entrez Id: 55016
Gene Symbol: MARCHF1
MARCHF1
0.010 Biomarker disease BEFREE From March 1, 2015 to August 31, 2017, anti-HEV immunoglobulin G was retrospectively determined among 3,293 HIV-positive patients, who were mainly MSM (87.6%) with a median CD4 count of 575 cells/μL. 31100186 2019
Entrez Id: 5900
Gene Symbol: RALGDS
RALGDS
0.010 Biomarker disease BEFREE Here, we investigated whether we could further enhance cellular by incorporating either a RGDS synergy peptide PHSRN or a cell-penetrating Tat peptide derived from human immunodeficiency virus (HIV). 30777745 2019
Entrez Id: 808
Gene Symbol: CALM3
CALM3
0.010 Biomarker disease BEFREE HIV-unexposed (HU) (n = 212) and HIV-exposed, uninfected (HEU) (n = 71) children received measles vaccination (CAM-70) at 6 and 12 months of age. 31282539 2019
Entrez Id: 450095
Gene Symbol: PLF
PLF
0.010 Biomarker disease BEFREE A Common NLRC4 Gene Variant Associates With Inflammation and Pulmonary Function in Human Immunodeficiency Virus and Tuberculosis. 31751447 2019
Entrez Id: 171558
Gene Symbol: PTCRA
PTCRA
0.010 GeneticVariation disease BEFREE <b>Results:</b> Sensorineural hearing loss in the higher frequencies is a common form of hearing loss in HIV infected individuals throughout disease progression, along with decreased otoacoustic emission (OAE) responses, increased PTA hearing thresholds and prolonged latencies for auditory brainstem responses (ABR). 31447765 2019
Entrez Id: 10998
Gene Symbol: SLC27A5
SLC27A5
0.010 Biomarker disease BEFREE Abbreviation: Arg1: Arginase 1; BAL: Bronchoalveolar lavage; CCL17: Chemokine (C-C motif) ligand 17; CNS: Central nervous system; CSF: Cerebrospinal fluid; Csf2: Colony-stimulating factor 2; Fizz1: Found in inflammatory zone 1; HIV: Human immunodeficiency virus; ICL: Intracellular cryptococcal load; Ifng: Interferon gamma; Ip10: IFN-g-inducible protein 10; IPR: Intracellular proliferation rate; Mcp1: Monocyte chemoattractant protein 1; Nos2: Nitric oxide synthase 2; PBS: Phosphate-Buffered Saline; Th: T helper cell; Tnfa: Tumor necrosis factor alpha. 30520685 2019