Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.100 Biomarker group BEFREE <b>Purpose:</b> A phase Ib study of dasatinib plus ipilimumab in patients with gastrointestinal stromal tumor (GIST) and other sarcomas was performed on the basis of preclinical data demonstrating that combined KIT and CTLA-4 blockade is synergistic.<b>Experimental Design:</b> A standard 3 + 3 design was used to evaluate the safety, efficacy, and immune correlates of treatment. 28007774 2017
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.010 Biomarker group BEFREE <b>Purpose:</b> A phase Ib study of dasatinib plus ipilimumab in patients with gastrointestinal stromal tumor (GIST) and other sarcomas was performed on the basis of preclinical data demonstrating that combined KIT and CTLA-4 blockade is synergistic.<b>Experimental Design:</b> A standard 3 + 3 design was used to evaluate the safety, efficacy, and immune correlates of treatment. 28007774 2017
Entrez Id: 7514
Gene Symbol: XPO1
XPO1
0.020 AlteredExpression group BEFREE <b>Purpose:</b> Selinexor, a small molecule that inhibits nuclear export protein XPO1, has demonstrated efficacy in solid tumors and hematologic malignancies with the evidence of clinical activity in sarcoma as a single agent. 28314790 2017
Entrez Id: 23152
Gene Symbol: CIC
CIC
0.100 Biomarker group BEFREE <i>CIC-DUX4</i> Induces Small Round Cell Sarcomas Distinct from Ewing Sarcoma. 28404587 2017
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 5894
Gene Symbol: RAF1
RAF1
0.090 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 22882
Gene Symbol: ZHX2
ZHX2
0.070 GeneticVariation group BEFREE <i>EGFR</i>-dependent (T790M and C797S mutations) and independent (Mesenchymal Epithelial Transition [<i>MET</i>] gene amplification, Kirsten Rat Sarcoma [<i>KRAS</i>], Phosphatidyl-Inositol 4,5-bisphosphate 3-Kinase Catalytic subunit Alpha isoform [<i>PI3KCA</i>], and RAF murine sarcoma viral oncogene homolog B1 [<i>BRAF</i>] gene mutations) mechanisms of resistance to EGFR tyrosine kinase inhibitors (TKIs) have been evaluated in plasma samples from NSCLC patients using highly sensitive methods (i.e., digital droplet PCR, Next Generation Sequencing), allowing for the switch to other therapies. 31416192 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE (2) Coincidental p53 allele mutation and PML loss shifts the tumor profile toward sarcoma formation, which is paralleled in human leiomyosarcomas (indicated by immunohistochemistry; IHC). 23656786 2013
Entrez Id: 2335
Gene Symbol: FN1
FN1
0.050 Biomarker group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 3902
Gene Symbol: LAG3
LAG3
0.030 AlteredExpression group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 1218
Gene Symbol: CMD1B
CMD1B
0.020 AlteredExpression group BEFREE (i) FN from fetal connective tissue, placenta, amniotic fluid, hepatoma, and colon carcinoma as well as cell lines from fetal tissues (WI-38), hepatomas (HuH-6 and HuH-7), and sarcoma (VA13) was characterized by the presence of the FDC-6-defined domain and by a high molecular weight (subunit Mr, 310,000-335,000). 2995969 1985
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.020 Biomarker group BEFREE 51:3011-3017) have demonstrated that murine sarcoma and colon adenocarcinoma cells express high affinity interleukin-4 receptors (IL-4R) which are internalized after binding to a chimeric ligand consisting of IL-4 and Pseudomonas exotoxin. 8423237 1993
Entrez Id: 5947
Gene Symbol: RBP1
RBP1
0.010 Biomarker group BEFREE Sarcoma virus 40-immortalized human mammary epithelial cells (MTSV1-7) devoid of CRBP-I were transfected with wild-type CRBP-I or CRBP-I point mutants with low RA binding affinity. 15632377 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Sarcomas represent a rational target for this approach given the high frequency of p53 mutations (40-75%) and MDM-2 amplification (10-30%). 15647767 2005
Entrez Id: 4193
Gene Symbol: MDM2
MDM2
0.100 GeneticVariation group BEFREE Sarcomas represent a rational target for this approach given the high frequency of p53 mutations (40-75%) and MDM-2 amplification (10-30%). 15647767 2005
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.020 AlteredExpression group BEFREE Sarcomas had the highest levels of MMP-9 monomer and dimer with and without PMA among these cancer cell lines. 24378964 2014
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.010 Biomarker group BEFREE Sarcoma death was specifically associated with caspase-8 activation starting from 8 hours of coculture with MSC-TRAIL. 25420617 2015
Entrez Id: 9353
Gene Symbol: SLIT2
SLIT2
0.010 Biomarker group BEFREE Sarcoma implantation induces an increase in Slit2 and decreases Robo1 and RhoA, while Slit2 knockdown results in an increase of Robo1 and RhoA. 26738857 2017
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Sarcoma physicians (N = 124) from 21 countries participated, 40% of whom favored TP53 mutation testing in children regardless of family history, increasing to ∼83% for all age groups if a family history was present and ∼85% if multiple primary cancers were present. 26923110 2016
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.100 Biomarker group BEFREE Sarcomas harbouring BCOR-CCNB3 rarely arise from soft tissues; therefore, we aimed to report four cases to expand the clinicopathological spectrum. 27228320 2016
Entrez Id: 8842
Gene Symbol: PROM1
PROM1
0.030 Biomarker group BEFREE Sarcoma cells grown as spheroids to enrich for CD133(+) cancer stem-like cells were more sensitive than monolayer cells to multimodal therapy in terms of DNA damage and apoptosis, especially under hypoxic conditions. 27374091 2016
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.010 Biomarker group BEFREE Sarcoma patients were significantly more likely to be interested in CAM after the diagnosis than patients with GIST. 31331555 2019
Entrez Id: 801
Gene Symbol: CALM1
CALM1
0.010 Biomarker group BEFREE Sarcoma patients were significantly more likely to be interested in CAM after the diagnosis than patients with GIST. 31331555 2019
Entrez Id: 808
Gene Symbol: CALM3
CALM3
0.010 Biomarker group BEFREE Sarcoma patients were significantly more likely to be interested in CAM after the diagnosis than patients with GIST. 31331555 2019
Entrez Id: 79823
Gene Symbol: CAMKMT
CAMKMT
0.010 Biomarker group BEFREE Sarcoma patients were significantly more likely to be interested in CAM after the diagnosis than patients with GIST. 31331555 2019