Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1048
Gene Symbol: CEACAM5
CEACAM5
0.100 Biomarker disease BEFREE "Catch-and-Release" Anti-Carcinoembryonic Antigen Monoclonal Antibody Leads to Greater Plasma and Tumor Exposure in a Mouse Model of Colorectal Cancer. 29735609 2018
Entrez Id: 7099
Gene Symbol: TLR4
TLR4
0.100 Biomarker disease BEFREE <b>Abbreviations</b>: TLR4: Toll-like receptor 4; HDACi: histone deacetylase inhibitor; SB: sodium Butyrate; CRC: colorectal cancer; SCFA: short-chain fatty acid; hrs: hours. 31117848 2019
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.100 AlteredExpression disease BEFREE <b>Abbreviations</b>: ACTB: actin beta; ATG5: autophagy related 5; ATG12: autophagy related 12; CQ: chloroquine; CRC: colorectal cancer; CTNNB1: catenin beta 1; EBSS: Earle's balanced salt solution; KO: knockout; LAMP1: lysosomal associated membrane protein 1; LAMP2: lysosomal associated membrane protein 2; MAP1LC3: microtubule associated protein 1 light chain 3; MKI67: marker of proliferation Ki-67; mRNA: messenger RNA; PX: phox homology; RT-qPCR: real time quantitative polymerase chain reaction; siRNA: small interfering RNA; SNX10: sorting nexin 10; SQSTM1: sequestosome 1; SRC: SRC proto-oncogene, non-receptor tyrosine kinase; STAT3: signal transducer and activator of transcription 3; WT: wild type. 31208298 2020
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.080 Biomarker disease BEFREE <b>Abbreviations:</b> AMBRA1: autophagy and beclin 1 regulator 1; AOM: azoxymethane; ATG5: autophagy related 5; ATG7: autophagy related 7; Baf A1: bafilomycin A<sub>1</sub>; BECN1: beclin 1; CoIP: co-immunoprecipitation; CQ: chloroquine; CRC: colorectal cancer; CTNNB1/β-catenin: catenin beta 1; DSS: dextran sodium sulfate; EMT: epithelial-mesenchymal transition; FBS: fetal bovine serum; GFP: green fluorescent protein; GSK3B/GSK3β: glycogen synthase kinase 3 beta; IgG: Immunoglobulin G; IHC: immunohistochemistry; LIR: LC3-interacting region; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; RFP: red fluorescent protein; RT: room temperature; shRNA: short hairpin RNA; siRNA: small interfering RNA; TRAF6: TNF receptor-associated factor 6; WT: wild-type; ZEB1: zinc finger E-box binding homeobox 1. 30806153 2019
Entrez Id: 8678
Gene Symbol: BECN1
BECN1
0.080 GeneticVariation disease BEFREE <b>Abbreviations:</b> AMBRA1: autophagy and beclin 1 regulator 1; AOM: azoxymethane; ATG5: autophagy related 5; ATG7: autophagy related 7; Baf A1: bafilomycin A<sub>1</sub>; BECN1: beclin 1; CoIP: co-immunoprecipitation; CQ: chloroquine; CRC: colorectal cancer; CTNNB1/β-catenin: catenin beta 1; DSS: dextran sodium sulfate; EMT: epithelial-mesenchymal transition; FBS: fetal bovine serum; GFP: green fluorescent protein; GSK3B/GSK3β: glycogen synthase kinase 3 beta; IgG: Immunoglobulin G; IHC: immunohistochemistry; LIR: LC3-interacting region; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; RFP: red fluorescent protein; RT: room temperature; shRNA: short hairpin RNA; siRNA: small interfering RNA; TRAF6: TNF receptor-associated factor 6; WT: wild-type; ZEB1: zinc finger E-box binding homeobox 1. 30806153 2019
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.100 AlteredExpression disease BEFREE <b>Abbreviations:</b> AMBRA1: autophagy and beclin 1 regulator 1; AOM: azoxymethane; ATG5: autophagy related 5; ATG7: autophagy related 7; Baf A1: bafilomycin A<sub>1</sub>; BECN1: beclin 1; CoIP: co-immunoprecipitation; CQ: chloroquine; CRC: colorectal cancer; CTNNB1/β-catenin: catenin beta 1; DSS: dextran sodium sulfate; EMT: epithelial-mesenchymal transition; FBS: fetal bovine serum; GFP: green fluorescent protein; GSK3B/GSK3β: glycogen synthase kinase 3 beta; IgG: Immunoglobulin G; IHC: immunohistochemistry; LIR: LC3-interacting region; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; RFP: red fluorescent protein; RT: room temperature; shRNA: short hairpin RNA; siRNA: small interfering RNA; TRAF6: TNF receptor-associated factor 6; WT: wild-type; ZEB1: zinc finger E-box binding homeobox 1. 30806153 2019
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.100 Biomarker disease BEFREE <b>Background:</b> The Adenoma Prevention with Celecoxib (APC) Trial showed that cyclooxygenase-2 (Cox-2) inhibitor, celecoxib, decreased adenoma development in patients at high risk for colorectal cancer. 29769213 2018
Entrez Id: 6280
Gene Symbol: S100A9
S100A9
0.050 Biomarker disease BEFREE <b>Conclusion</b>: S100A9 and TNC levels could serve as diagnostic biomarkers of colorectal cancer. 31632476 2019
Entrez Id: 3371
Gene Symbol: TNC
TNC
0.060 Biomarker disease BEFREE <b>Conclusion</b>: S100A9 and TNC levels could serve as diagnostic biomarkers of colorectal cancer. 31632476 2019
Entrez Id: 6383
Gene Symbol: SDC2
SDC2
0.060 Biomarker disease BEFREE <b>Conclusion</b>: The methylation of SEPT9, NDRG4, and SDC2 in stool may be a potential biomarker for early screening of colorectal cancer. 31602277 2019
Entrez Id: 10606
Gene Symbol: PAICS
PAICS
0.010 Biomarker disease BEFREE <b>HIGHLIGHTS</b> Preliminary results of this work were presented at the 2016 Academic Surgical Congress, Jacksonville (FL), February 2-4 2016 (Original title: Selective Smo-Inhibition Interferes With Cellular Energetic Metabolism In Colorectal Cancer)This study was funded by "Sapienza-University of Rome" (Funds for young researchers) and "AIRC" (Italian Association for Cancer Research)Hedgehog inhibitor was kindly provided by Genentech, Inc.®. 29456503 2017
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.100 Biomarker disease BEFREE <b>Introduction</b>: Some studies have suggested that baseline tumor-infiltrating-lymphocytes (TILs), such as CD8+ and FoxP3+ T-cells, may be associated with a better prognosis in colorectal cancer. 29399395 2018
Entrez Id: 10232
Gene Symbol: MSLN
MSLN
0.020 AlteredExpression disease BEFREE <b>Methods</b> We performed a two-stage case-control study to evaluate plasma mesothelin levels in colorectal cancer using enzyme-linked immunosorbent assay (ELISA). 28638449 2017
Entrez Id: 10401
Gene Symbol: PIAS3
PIAS3
0.010 AlteredExpression disease BEFREE <b>Methods:</b> PIAS3 expression was examined in colon tissues of CAC/CRC patients and azoxymethane-dextran sulfate sodium (AOM-DSS)-induced mice. 29896300 2018
Entrez Id: 23476
Gene Symbol: BRD4
BRD4
0.030 AlteredExpression disease BEFREE <b>Methods:</b> We analyzed The Cancer Genome Atlas (TCGA) database to investigate BRD4 expression in colorectal cancer patient. 31523195 2019
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.100 Biomarker disease BEFREE <b>Purpose:</b> There is extensive cross-talk between VEGF- and EGFR-pathway signaling in colorectal cancer. 29490990 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 Biomarker disease BEFREE <b>Purpose:</b> There is extensive cross-talk between VEGF- and EGFR-pathway signaling in colorectal cancer. 29490990 2018
Entrez Id: 3170
Gene Symbol: FOXA2
FOXA2
0.010 AlteredExpression disease BEFREE <b>Results:</b> HNF3β expression was lower in colon cancer tissue compared to normal tissue and correlated with UICC clinical stage (<i>P</i> = 0.001), depth of invasion (<i>P</i> = 0.004), regional lymph node metastasis (<i>P</i> = 0.007), distant metastasis (<i>P</i> = 0.048), and poor survival (<i>P</i> < 0.001) in patients with colorectal cancer. 31696055 2019
Entrez Id: 406953
Gene Symbol: MIR18A
MIR18A
0.040 AlteredExpression disease BEFREE <b>Results:</b> Downregulated PIAS3 expression, upregulated miR-18a expression and highly activated NF-κB and STAT3 were observed in colon tissues of CAC/CRC patients and AOM-DSS-induced mice. 29896300 2018
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.100 AlteredExpression disease BEFREE <b>Results:</b> Downregulated PIAS3 expression, upregulated miR-18a expression and highly activated NF-κB and STAT3 were observed in colon tissues of CAC/CRC patients and AOM-DSS-induced mice. 29896300 2018
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.080 Biomarker disease BEFREE <b>Results:</b> Downregulated PIAS3 expression, upregulated miR-18a expression and highly activated NF-κB and STAT3 were observed in colon tissues of CAC/CRC patients and AOM-DSS-induced mice. 29896300 2018
Entrez Id: 9066
Gene Symbol: SYT7
SYT7
0.010 AlteredExpression disease BEFREE <b>Results:</b> Our results show that the expression of SYT7 is upregulated in colorectal cancer tissues in comparison with normal tissues and positively correlated with the pathological stage of colorectal cancer.(P=0.015). 30026831 2018
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE <b/> BRAF mutations in colorectal cancer portend a poor prognosis, with first-line treatment often involving triplet or quadruplet chemotherapy, and single-agent targeted therapy with BRAF inhibitors failing to demonstrate clinical activity. 28576843 2017
Entrez Id: 374
Gene Symbol: AREG
AREG
0.090 Biomarker disease BEFREE <i>Amphiregulin/epiregulin</i> mRNA Expression and Primary Tumor Location in Colorectal Cancer. 31519572 2019
Entrez Id: 6364
Gene Symbol: CCL20
CCL20
0.060 AlteredExpression disease BEFREE <i>animalis</i> induced CCL20 protein expression in colorectal cancer cells and monocytes. 28483840 2017