Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 339535
Gene Symbol: LINC01139
LINC01139
0.090 Biomarker disease BEFREE <b>Introduction</b>: LINK-A lncRNA is a well-characterized oncogenic lncRNA only in triple negative breast cancer. 30061183 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.100 AlteredExpression disease BEFREE <b>Methods</b>: A novel biocompatible linear copolymer poly[<i>bis</i>(ε-Lys-PEI)Glut-PEG] (PLEGP) was developed to deliver VEGF siRNA for TNBC therapy. 31285776 2019
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.100 AlteredExpression disease BEFREE <b>Methods:</b> E-cadherin, Slug, Twist and Vimentin levels were detected by immunohistochemistry in 167 TNBC tumors, including 145 invasive carcinomas of no special type (ICONSTs), 14 spindle cell carcinomas (SpCCs) and 8 matrix-producing carcinomas (MPCs). 29483966 2018
Entrez Id: 142
Gene Symbol: PARP1
PARP1
0.100 Biomarker disease BEFREE <b>Purpose:</b> Both PARP inhibitors (PARPi) and sacituzumab govitecan (IMMU-132) are currently under clinical evaluation in triple-negative breast cancer (TNBC). 28069724 2017
Entrez Id: 1302
Gene Symbol: COL11A2
COL11A2
0.100 Biomarker disease BEFREE <b>Purpose:</b> Both PARP inhibitors (PARPi) and sacituzumab govitecan (IMMU-132) are currently under clinical evaluation in triple-negative breast cancer (TNBC). 28069724 2017
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 Biomarker disease BEFREE <b>Purpose:</b> The EGFR is frequently overexpressed in TNBC, and the EGFR-overexpressing TNBC presumably escapes EGFR inhibitor therapy by upregulating autophagy and inhibiting apoptosis. 31839713 2019
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 Biomarker disease BEFREE <b>Rationale:</b> Triple-negative breast cancer (TNBC) is characterized by the absence of estrogen receptor alpha (ER-α), human epidermal growth factor receptor 2 (HER2) and progesterone receptor (PR) expression, but the effect of lacking the three factors on TNBC is unclear. 30867840 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE <b>Rationale:</b> Triple-negative breast cancer (TNBC) is characterized by the absence of estrogen receptor alpha (ER-α), human epidermal growth factor receptor 2 (HER2) and progesterone receptor (PR) expression, but the effect of lacking the three factors on TNBC is unclear. 30867840 2019
Entrez Id: 5241
Gene Symbol: PGR
PGR
0.100 AlteredExpression disease BEFREE <b>Rationale:</b> Triple-negative breast cancer (TNBC) is characterized by the absence of estrogen receptor alpha (ER-α), human epidermal growth factor receptor 2 (HER2) and progesterone receptor (PR) expression, but the effect of lacking the three factors on TNBC is unclear. 30867840 2019
Entrez Id: 81607
Gene Symbol: NECTIN4
NECTIN4
0.020 AlteredExpression disease BEFREE <b>Results:</b> A high expression of Nectin-4 was present in 86 (58%) of the 148 TNBC cases. 31572728 2019
Entrez Id: 23476
Gene Symbol: BRD4
BRD4
0.050 Biomarker disease BEFREE <b>Results:</b> Head-to-head comparison showed that <sup>89</sup>Zr-transferrin targets TNBC tumors significantly better (<i>P</i> < 0.05-0.001) than <sup>18</sup>F-FDG through PET imaging and biodistribution studies in MDA-MB-231 and MDA-MB-157 xenografts and a patient-derived xenograft model of TNBC. c-Myc and <i>TfR</i> gene expression was decreased upon treatment with BRD4 inhibitors and <i>c-MYC</i> small interfering RNA (<i>P</i> < 0.01-0.001 for responding cell lines), compared with vehicle treatment. 28848040 2018
Entrez Id: 27430
Gene Symbol: MAT2B
MAT2B
0.010 AlteredExpression disease BEFREE <b>Results:</b> We found that the mRNA levels of MAT2B were upregulated in all human TNBC cell lines tested. 31354356 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.100 AlteredExpression disease BEFREE <i>IL1A</i>, <i>IL1B</i>, <i>IL8</i>/<i>CXCL8</i>, <i>IL32</i> and <i>IL27RA</i> in IL superfamily and <i>CD70</i>, <i>TNFSF9</i> and <i>TNFRSF21</i> in TNF superfamily were highly expressed in TNBC compared to other subtypes. 30728901 2019
Entrez Id: 100302256
Gene Symbol: MIR1180
MIR1180
0.010 AlteredExpression disease BEFREE <i>In silico</i> analysis suggested that <i>OTUD7B</i> regulation, probably owing to miR-1180 downregulation, may negatively regulate the NF-κB-Lin28 axis which in turn triggers Let-7 microRNA-mediated caspase-3 downregulation, thereby conferring paclitaxel resistance in TNBCs. 29416635 2018
Entrez Id: 79727
Gene Symbol: LIN28A
LIN28A
0.010 Biomarker disease BEFREE <i>In silico</i> analysis suggested that <i>OTUD7B</i> regulation, probably owing to miR-1180 downregulation, may negatively regulate the NF-κB-Lin28 axis which in turn triggers Let-7 microRNA-mediated caspase-3 downregulation, thereby conferring paclitaxel resistance in TNBCs. 29416635 2018
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.060 AlteredExpression disease BEFREE <i>In silico</i> analysis suggested that <i>OTUD7B</i> regulation, probably owing to miR-1180 downregulation, may negatively regulate the NF-κB-Lin28 axis which in turn triggers Let-7 microRNA-mediated caspase-3 downregulation, thereby conferring paclitaxel resistance in TNBCs. 29416635 2018
Entrez Id: 102465485
Gene Symbol: MIR6809
MIR6809
0.010 AlteredExpression disease BEFREE <i>In vitro</i> and <i>in vivo</i> experiments indicated that circEPSTI1 binds to miR-4753 and miR-6809 as a miRNA sponge to regulate BCL11A expression and affect TNBC proliferation and apoptosis. 30083277 2018
Entrez Id: 10457
Gene Symbol: GPNMB
GPNMB
0.010 AlteredExpression disease BEFREE <i>MAFK</i> and <i>GPNMB</i> expression correlated with poor prognosis in TNBC patients. 28400538 2017
Entrez Id: 51152
Gene Symbol: LINC00328
LINC00328
0.010 AlteredExpression disease BEFREE <i>Objective</i>.In the current study, we measured the expression status of melanoma antigen gene c2 (MAGE-C2) in triple-negative breast cancer (TNBC) and analyzed its prognostic with the clinical pathological features of patients with TNBC.<i>Methods</i>. 27843173 2016
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.080 Biomarker disease BEFREE <sup>111</sup>In- and <sup>225</sup>Ac-Labeled Cixutumumab for Imaging and α-Particle Radiotherapy of IGF-1R Positive Triple-Negative Breast Cancer. 31518138 2019
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.050 Biomarker disease BEFREE <sup>18</sup>F-FDG PET imaging for monitoring the early anti-tumor effect of albendazole on triple-negative breast cancer. 31781983 2019
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.030 Biomarker disease BEFREE <sup>99m</sup>Tc-labeled LyP-1 showed high radiochemical purity and stability and could be used as a probe for targeted SPECT imaging of TNBC cells in vitro and in a TNBC tumor-bearing mouse model. 31598115 2019
Entrez Id: 257
Gene Symbol: ALX3
ALX3
0.010 Biomarker disease BEFREE (iii) Cell death ELISA assays were performed after treating ER+BC and TNBC cells with FND-4b for 72h. 30875375 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.100 Biomarker disease BEFREE 103 tissue microarray samples derived from triple negative breast cancer specimens were immunohistochemically stained against PD-1 and PD-L1. 29464065 2018
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.100 GeneticVariation disease BEFREE 119 out of 163 TNBC patients (73%) had a BRCA1-like profile. 28822007 2017