Source: GWASDB ×
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
13 0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 0.860 0.800 2 2005 2016
dbSNP: rs2066844
rs2066844
NOD2
1 0.587 0.520 16 50712015 missense variant C/T snv 2.6E-02 2.9E-02 1.000 0.940 2 2001 2018
dbSNP: rs11209026
rs11209026
IL23R
5 0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 0.900 0.944 8 2006 2020
dbSNP: rs1799964
rs1799964
LTA ; TNF ; LOC100287329
1 0.608 0.760 6 31574531 upstream gene variant T/C snv 0.19 0.800 1.000 1 2010 2010
dbSNP: rs2066845
rs2066845
NOD2
1 0.611 0.600 16 50722629 missense variant G/C;T snv 1.1E-02; 2.2E-04 1.000 0.949 3 2001 2019
dbSNP: rs2241880
rs2241880
ATG16L1 ; SCARNA5
1 0.627 0.600 2 233274722 missense variant A/G snv 0.45 0.44 0.900 0.961 4 2007 2020
dbSNP: rs10889677
rs10889677
IL23R
2 0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 0.850 1.000 2 2006 2020
dbSNP: rs6679677
rs6679677
PHTF1
6 0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 0.800 1.000 2 2008 2015
dbSNP: rs780094
rs780094
GCKR
24 0.658 0.400 2 27518370 intron variant T/C snv 0.67 0.800 1.000 1 2008 2015
dbSNP: rs744166
rs744166
STAT3
3 0.689 0.560 17 42362183 intron variant A/G snv 0.48 0.870 1.000 1 2008 2016
dbSNP: rs7517847
rs7517847
IL23R ; C1orf141
2 0.689 0.600 1 67215986 intron variant T/G snv 0.37 0.880 1.000 1 2007 2019
dbSNP: rs2066847
rs2066847
NOD2
2 0.716 0.400 16 50729868 frameshift variant C/-;CC delins 1.5E-02 0.890 0.923 4 2005 2019
dbSNP: rs2201841
rs2201841
IL23R ; C1orf141
4 0.716 0.440 1 67228519 intron variant A/G;T snv 0.850 1.000 2 2006 2013
dbSNP: rs9275572
rs9275572 		9 0.724 0.360 6 32711222 upstream gene variant A/G;T snv 0.700 1.000 1 2013 2013
dbSNP: rs3197999
rs3197999
APEH ; MST1
6 0.732 0.280 3 49684099 missense variant G/A snv 0.26 0.27 0.830 1.000 2 2008 2017
dbSNP: rs7848647
rs7848647
TNFSF15
1 0.732 0.320 9 114806766 upstream gene variant T/C snv 0.74 0.840 1.000 1 2005 2018
dbSNP: rs1893217
rs1893217
PTPN2
8 0.742 0.440 18 12809341 intron variant A/G snv 0.12 0.850 1.000 3 2008 2016
dbSNP: rs3810936
rs3810936
TNFSF15
1 0.742 0.320 9 114790605 synonymous variant T/C snv 0.71 0.75 0.850 1.000 2 2005 2018
dbSNP: rs2516049
rs2516049
HLA-DRB1
9 0.742 0.400 6 32602623 intergenic variant T/C snv 0.27 0.710 1.000 1 2013 2016
dbSNP: rs7927894
rs7927894 		5 0.742 0.320 11 76590272 upstream gene variant C/T snv 0.35 0.810 1.000 1 2008 2011
dbSNP: rs11465804
rs11465804
IL23R
3 0.752 0.320 1 67236843 intron variant T/G snv 4.4E-02 5.4E-02 0.800 1.000 4 2006 2010
dbSNP: rs1343151
rs1343151
IL23R
1 0.752 0.400 1 67253446 intron variant G/A snv 0.41 0.800 1.000 3 2006 2007
dbSNP: rs6478109
rs6478109
TNFSF15
2 0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74 0.830 1.000 3 2005 2016
dbSNP: rs13361189
rs13361189 		1 0.752 0.240 5 150843825 upstream gene variant T/C snv 0.21 0.850 1.000 2 2007 2015
dbSNP: rs2301436
rs2301436
FGFR1OP
4 0.752 0.320 6 167024500 intron variant C/T snv 0.42 0.810 1.000 2 2008 2016