Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs147680216
rs147680216
0.020 GeneticVariation BEFREE The WNT10A p.G213S mutation was confirmed to be the etiological cause of tooth agenesis and ectodermal dysplasia as previously described. 28944914

2017

dbSNP: rs147680216
rs147680216
0.020 GeneticVariation BEFREE For rs116998555, the presence of the T allele (the thymine variant) was associated with tooth agenesis [odds ratio (OR) = 5.722; 95% confidence interval (CI) = 3.053-10.727; P < 0.001], while for rs147680216, the A allele (the adenine variant) correlated with this condition (OR = 2.665; 95%CI = 1.512-4.695; P < 0.001). 27050986

2016

dbSNP: rs17563
rs17563
0.020 GeneticVariation BEFREE This case-control study was designed to evaluate the association of the polymorphism rs17563 in BMP4 gene with susceptibility of isolated human tooth agenesis in a Chinese Han population. 26166641

2015

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE A case-control study was performed on 50 subjects with sporadic tooth agenesis (cases) and 100 healthy controls, which genotyped a PAX9 gene polymorphism (rs4904210). 23857653

2013

dbSNP: rs17563
rs17563
0.020 GeneticVariation BEFREE To evaluate the association of the polymorphisms in the TGFB3 gene (rs2268626) and the BMP4 gene (rs17563) with isolated human tooth agenesis. 22191848

2012

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE Aggregating the available data, there does not seem to exist a clear association between the alanine 240 for proline variant in the PAX9 gene and the MLIA phenotype. 20660504

2010

dbSNP: rs12532
rs12532
0.010 GeneticVariation BEFREE Although our results are consistent with a lack of association of MSX1 rs12532 and the risk of unilateral NSCLP and tooth agenesis, further studies with additional SNPs and a more diverse ethnic cohort are warranted. 31568994

2020

dbSNP: rs1292564852
rs1292564852
0.010 GeneticVariation BEFREE Novel Wnt10A mutations (c.521T>C and c.653T>G) and EVC2 mutation (c.1472C>T) were identified in families with selective tooth agenesis. 30417976

2019

dbSNP: rs1444216093
rs1444216093
0.010 GeneticVariation BEFREE Novel Wnt10A mutations (c.521T>C and c.653T>G) and EVC2 mutation (c.1472C>T) were identified in families with selective tooth agenesis. 30417976

2019

dbSNP: rs2240308
rs2240308
0.010 GeneticVariation BEFREE The presence of the variant A allele of AXIN2 rs2240308 is associated with frontal agenesis but not with lateral agenesis. 31781599

2019

dbSNP: rs758420403
rs758420403
0.010 GeneticVariation BEFREE Novel Wnt10A mutations (c.521T>C and c.653T>G) and EVC2 mutation (c.1472C>T) were identified in families with selective tooth agenesis. 30417976

2019

dbSNP: rs777307167
rs777307167
0.010 GeneticVariation BEFREE Novel Wnt10A mutations (c.521T>C and c.653T>G) and EVC2 mutation (c.1472C>T) were identified in families with selective tooth agenesis. 30417976

2019

dbSNP: rs8049367
rs8049367
0.010 GeneticVariation BEFREE However, in the subgroup analysis by tooth position, rs8049367 was nominally associated with mandibular premolar agenesis (Dominant model: OR<sub>dom</sub>  = 0.66, 95% CI<sub>dom</sub>  = 0.47-0.93, p<sub>dom</sub>  = 0.016; Heterozygote model: OR<sub>het</sub>  = 0.60, 95% CI<sub>het</sub>  = 0.41-0.88, P<sub>het</sub>  = 0.008). 30578605

2019

dbSNP: rs8670
rs8670
0.010 GeneticVariation BEFREE The variant genotype of the MSX1 rs8670 SNP was the most frequent in frontal agenesis; meanwhile in the lateral agenesis NSH group, the AXIN2 rs2240308 SNP showed a higher frequency of the variant genotype, with a trend towards statistical significance. 31781599

2019

dbSNP: rs114632254
rs114632254
0.010 GeneticVariation BEFREE Prioritization of variants "by function" allowed the identification of multiple variants contributing to the trait, including two concomitant heterozygous variants in EDARADD (c.308C>T, p.Ser103Phe) and COL5A1 (c.1588G>A, p.Gly530Ser), specifically associated with a more severe phenotype (i.e. canine agenesis). 29705498

2018

dbSNP: rs11806449
rs11806449
0.010 GeneticVariation BEFREE The rs11806449 did not correlate either with the overall TA phenotype or hypodontia/oligodontia phenotypes. 28992378

2018

dbSNP: rs121908119
rs121908119
0.010 GeneticVariation BEFREE We report a nonsense heterozygous mutation in exon 2 of WNT10A c.321C>A[p.Cys107*] likely to be responsible for the severe tooth agenesis identified in this family through the creation of a premature stop codon, resulting in truncation of the amino acid sequence and therefore loss of protein function. 29927056

2018

dbSNP: rs61735045
rs61735045
0.010 GeneticVariation BEFREE Prioritization of variants "by function" allowed the identification of multiple variants contributing to the trait, including two concomitant heterozygous variants in EDARADD (c.308C>T, p.Ser103Phe) and COL5A1 (c.1588G>A, p.Gly530Ser), specifically associated with a more severe phenotype (i.e. canine agenesis). 29705498

2018

dbSNP: rs28933970
rs28933970
0.010 GeneticVariation BEFREE Characterization of PAX9 variant P20L identified in a Japanese family with tooth agenesis. 29023497

2017

dbSNP: rs116998555
rs116998555
0.010 GeneticVariation BEFREE For rs116998555, the presence of the T allele (the thymine variant) was associated with tooth agenesis [odds ratio (OR) = 5.722; 95% confidence interval (CI) = 3.053-10.727; P < 0.001], while for rs147680216, the A allele (the adenine variant) correlated with this condition (OR = 2.665; 95%CI = 1.512-4.695; P < 0.001). 27050986

2016

dbSNP: rs121908568
rs121908568
0.010 GeneticVariation BEFREE We analysed this novel AXIN2 mutant, together with two reported AXIN2 mutants [c.1966C>T (p.Arg656Stop) and c.1994delG (p.Leu688Stop)] that cause colorectal cancer with and without oligodontia, to study the effect of the mutant p.His660Tyr on the Wnt/β-catenin signaling pathway and to compare the molecular pathogenesis of different AXIN2 mutants in tooth agenesis and carcinogenesis. 27090353

2016

dbSNP: rs15705
rs15705
0.010 GeneticVariation BEFREE Taken together, our findings indicate that rs15705 and rs317250 are associated with the susceptibility of non-syndromic tooth agenesis by possibly affecting miRNAs and mRNA interaction. 27362534

2016

dbSNP: rs317250
rs317250
0.010 GeneticVariation BEFREE Taken together, our findings indicate that rs15705 and rs317250 are associated with the susceptibility of non-syndromic tooth agenesis by possibly affecting miRNAs and mRNA interaction. 27362534

2016

dbSNP: rs3178250
rs3178250
0.010 GeneticVariation BEFREE Both SNPs showed an increased risk of mandibular incisor agenesis (rs15705, AA/AC vs. CC = 1.58, 95% CI = [1.06-2.34], P = 0.024; rs3178250, TT/TC vs. CC = 1.60, 95% CI = [1.08-2.37], P = 0.020). 27362534

2016

dbSNP: rs11001553
rs11001553
0.010 GeneticVariation BEFREE These data demonstrated an association between rs11001553 of DKK1, a tooth development-associated gene, and non-syndromic tooth agenesis in Chinese Han individuals. 24737523

2014