Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2476601
rs2476601
1.000 GeneticVariation UNIPROT

dbSNP: rs2004640
rs2004640
T 0.790 CausalMutation CLINVAR

dbSNP: rs3087456
rs3087456
G 0.780 SusceptibilityMutation CLINVAR

dbSNP: rs2240340
rs2240340
C 0.770 GeneticVariation CLINVAR

dbSNP: rs1057523354
rs1057523354
A 0.700 CausalMutation CLINVAR

dbSNP: rs1557787212
rs1557787212
T 0.700 GeneticVariation CLINVAR

dbSNP: rs1566328963
rs1566328963
A 0.700 SusceptibilityMutation CLINVAR

dbSNP: rs3766379
rs3766379
C 0.700 SusceptibilityMutation CLINVAR

dbSNP: rs1801133
rs1801133
0.050 GeneticVariation BEFREE <b>Conclusion:</b> Our results showed that the MTHFR [677C>T (rs1801133)] TT genotype is associated with ADRs to MTX in Chinese RA patients. 30546311

2018

dbSNP: rs1217691063
rs1217691063
0.100 GeneticVariation BEFREE <b>Conclusion:</b> Our results showed that the MTHFR [677C>T (rs1801133)] TT genotype is associated with ADRs to MTX in Chinese RA patients. 30546311

2018

dbSNP: rs2910164
rs2910164
0.100 GeneticVariation BEFREE <b>Conclusions:</b> The association of miR-146a rs2910164 (G/C) with RA was not found. 31235484

2019

dbSNP: rs2910164
rs2910164
0.100 GeneticVariation BEFREE <b>Significance:</b> The miR-146a rs2910164 G > C polymorphism was not associated with susceptibility to RA. 30498453

2018

dbSNP: rs2476601
rs2476601
1.000 GeneticVariation BEFREE 167 patients with RA and 177 healthy controls are genotyped by polymerase chain reaction (PCR)-RFLP for the SNP (rs2476601, A/G) of PTPN22 gene. 19357851

2009

dbSNP: rs11761528
rs11761528
0.010 GeneticVariation BEFREE 448 RA and 648 healthy controls were genotyped for single-nucleotide polymorphisms (SNPs) in genes ZKSCAN5 (rs11761528), SULT2A1 (rs2637125), HHEX (rs2497306), and ARPC1A (rs740160). 28712091

2018

dbSNP: rs740160
rs740160
0.010 GeneticVariation BEFREE 448 RA and 648 healthy controls were genotyped for single-nucleotide polymorphisms (SNPs) in genes ZKSCAN5 (rs11761528), SULT2A1 (rs2637125), HHEX (rs2497306), and ARPC1A (rs740160). 28712091

2018

dbSNP: rs121912656
rs121912656
0.010 GeneticVariation BEFREE G245D mutation might especially need further study as it is the first recurrently identified p53 mutation in RA and is also one of the frequently identified mutations in human cancers. 10788533

2000

dbSNP: rs1799945
rs1799945
0.020 GeneticVariation BEFREE H63D mutation appears to play a role in pathogenesis of RA. 10990216

2000

dbSNP: rs1799945
rs1799945
0.020 GeneticVariation BEFREE H63D mutation may play a role in the pathogenesis of rheumatoid arthritis. 15785438

2004

dbSNP: rs2476601
rs2476601
1.000 GeneticVariation BEFREE Additional analyses identified two SNPs on a single common haplotype that are associated with RA independent of R620W, suggesting that R620W and at least one additional variant in the PTPN22 gene region influence RA susceptibility. 16175503

2005

dbSNP: rs3736228
rs3736228
0.010 GeneticVariation BEFREE A1330V polymorphism of low-density lipoprotein receptor-related protein 5 gene and self-reported incident fractures in Japanese female patients with rheumatoid arthritis. 19023643

2009

dbSNP: rs2903692
rs2903692
0.010 GeneticVariation BEFREE rs2903692 conferred a protective effect on patients with T1D, MS and RA. 19221398

2010

dbSNP: rs61752717
rs61752717
0.010 GeneticVariation BEFREE M694V was the only variant that was significantly more common in the AS group than in the combined or individual control groups (P = 0.026 for AS patients versus healthy controls, P = 0.046 for AS patients versus RA patient controls, and P = 0.008 for AS patients versus healthy and RA patient control groups). 20533539

2010

dbSNP: rs6908425
rs6908425
0.010 GeneticVariation BEFREE rs6908425 T>C in CDKAL1 was significantly different between SAPHO cases and healthy controls (odds ratios = 2.056, 95% confidence intervals: 1.211-3.490; p = 0.007), but no SNPs were associated with the risk of developing RA, AS, or SPA (p > 0.05). 27936930

2017

dbSNP: rs1217691063
rs1217691063
0.100 GeneticVariation BEFREE C677T MTHFR gene polymorphism is associated with RA in Egyptians. 28215593

2017

dbSNP: rs2476601
rs2476601
1.000 GeneticVariation BEFREE A C1858T single nucleotide polymorphism within PTPN22 (which encodes PTPN22<sup>R620W</sup>) is associated with an enhanced susceptibility to multiple autoimmune diseases including type 1 diabetes and rheumatoid arthritis. 30139951

2018