Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1064794254
rs1064794254
UPF3B
C 0.700 CausalMutation CLINVAR Broadening the phenotype associated with mutations in UPF3B: two further cases with renal dysplasia and variable developmental delay. 22609145

2012
dbSNP: rs1064794254
rs1064794254
UPF3B
C 0.700 CausalMutation CLINVAR Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism. 19238151

2010
dbSNP: rs1064794254
rs1064794254
UPF3B
C 0.700 CausalMutation CLINVAR Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation. 17704778

2007
dbSNP: rs10732392
rs10732392
LMX1B
0.010 GeneticVariation BEFREE Two SNPs (rs10732392 and rs12336217) showed moderate association with autism with p values 0.018 and 0.022 respectively in transmission disequilibrium test. 21901133

2011
dbSNP: rs10749886
rs10749886 		0.700 GeneticVariation GWASDB Individual common variants exert weak effects on the risk for autism spectrum disorders. 22843504

2012
dbSNP: rs1085307845
rs1085307845
PHIP
T 0.700 GeneticVariation CLINVAR

dbSNP: rs1085307993
rs1085307993
GABRB2
T 0.700 GeneticVariation CLINVAR

dbSNP: rs10858047
rs10858047 		T 0.700 GeneticVariation GWASCAT Common genetic variants on 1p13.2 associate with risk of autism. 24189344

2014
dbSNP: rs10877969
rs10877969
AVPR1A
0.010 GeneticVariation BEFREE Our results demonstrated a statistically significant association between autism and SNPs (additive model: rs7294536, chi(2)=9.328, df=2, P=0.002; rs10877969, chi(2)=11.529, df=2, P<0.001) as well as between autism and haplotype analysis (additive model: chi(2)=14.122, df=3, P=0.003). 20546835

2010
dbSNP: rs10904487
rs10904487 		0.700 GeneticVariation GWASDB Individual common variants exert weak effects on the risk for autism spectrum disorders. 22843504

2012
dbSNP: rs10942147
rs10942147
MSNP1
0.700 GeneticVariation GWASDB Common genetic variants on 5p14.1 associate with autism spectrum disorders. 19404256

2009
dbSNP: rs10951154
rs10951154
HOXA1 ; HOTAIRM1
0.040 GeneticVariation BEFREE More direct tests, comparing genotype frequencies between probands and controls and tracking transmission of the A versus G alleles to affected offspring, did not support the contention that allele status for the HOXA1 A218G polymorphism influences one's susceptibility to autism. 12908836

2003
dbSNP: rs10951154
rs10951154
HOXA1 ; HOTAIRM1
0.040 GeneticVariation BEFREE Association between the HOXA1 A218G polymorphism and increased head circumference in patients with autism. 14960295

2004
dbSNP: rs10951154
rs10951154
HOXA1 ; HOTAIRM1
0.040 GeneticVariation BEFREE Therefore, although we cannot exclude the possibility that the samples in the two studies are intrinsically different, our data from our sample argue against a major role for HOXA1 (His)73(Arg) in liability to autism. 12210285

2002
dbSNP: rs10951154
rs10951154
HOXA1 ; HOTAIRM1
0.040 GeneticVariation BEFREE The HOXA1 A218G polymorphism has been found to be associated with autism and larger head circumference in autistic patients. 19018953

2009
dbSNP: rs11080149
rs11080149
NF1 ; OMG
0.010 GeneticVariation BEFREE We previously described an association between a subgroup of French autistic patients and an allele of a non-synonymous single nucleotide polymorphism (nsSNP: OMGP62 G>A or rs11080149) in the gene coding for the oligodendrocyte and myelin glycoprotein (OMG), located at 7Mb from the marker D17S250, linked to autism in two independent genome scan studies. 17897745

2007
dbSNP: rs11102800
rs11102800
TRIM33
C 0.800 GeneticVariation GWASDB Common genetic variants on 1p13.2 associate with risk of autism. 24189344

2014
dbSNP: rs11102800
rs11102800
TRIM33
C 0.800 GeneticVariation GWASCAT Common genetic variants on 1p13.2 associate with risk of autism. 24189344

2014
dbSNP: rs11102807
rs11102807 		A 0.800 GeneticVariation GWASDB Common genetic variants on 1p13.2 associate with risk of autism. 24189344

2014
dbSNP: rs11102807
rs11102807 		A 0.800 GeneticVariation GWASCAT Common genetic variants on 1p13.2 associate with risk of autism. 24189344

2014
dbSNP: rs11118968
rs11118968
RASSF5
0.700 GeneticVariation GWASDB Individual common variants exert weak effects on the risk for autism spectrum disorders. 22843504

2012
dbSNP: rs11179000
rs11179000
TPH2
0.010 GeneticVariation BEFREE In particular, we failed to replicate the association between autism and variants of the TPH2 gene, rs4341581 (TRANSMIT P = 1; PDT P = 0.323; FBAT P = 0.446) and rs11179000 (TRANSMIT P = 0.174; PDT P = 0.293; FBAT P = 0.374). 16958027

2006
dbSNP: rs111902263
rs111902263
RNF135
0.010 GeneticVariation BEFREE We carried out a genetic analysis of the coding sequence of RFN135 in a French cohort of patients with autism and observed a significantly increased frequency of genotypes carrying the rare allele of the rs111902263 (p.R115K) missense variant in patients (P=0.0019, odds ratio: 4.23, 95% confidence interval: 1.87-9.57). 26368817

2015
dbSNP: rs111902263
rs111902263
RNF135
0.010 GeneticVariation BEFREE We carried out a genetic analysis of the coding sequence of RFN135 in a French cohort of patients with autism and observed a significantly increased frequency of genotypes carrying the rare allele of the rs111902263 (p.R115K) missense variant in patients (P=0.0019, odds ratio: 4.23, 95% confidence interval: 1.87-9.57). 26368817

2015
dbSNP: rs1119032
rs1119032
PCDHA9 ; PCDHA13 ; PCDHA12 ; PCDHA11 ; PCDHA10 ; PCDHA8 ; PCDHA7 ; PCDHA6 ; PCDHA5 ; PCDHA4 ; PCDHA3 ; PCDHA2 ; PCDHA1
0.010 GeneticVariation BEFREE Haplotypes involving rs1119032 showed very strong associations with autism, withstanding multiple testing corrections. 23031252

2013