Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1050631
rs1050631
SLC39A6
T 0.800 GeneticVariation GWASCAT Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma. 23644492

2013
dbSNP: rs1050631
rs1050631
SLC39A6
T 0.800 GeneticVariation GWASDB Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma. 23644492

2013
dbSNP: rs2285947
rs2285947
DNAH11
A 0.800 GeneticVariation GWASDB Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. 23103227

2012
dbSNP: rs2285947
rs2285947
DNAH11
A 0.800 GeneticVariation GWASCAT Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. 23103227

2012
dbSNP: rs2494938
rs2494938
LRFN2
A 0.800 GeneticVariation GWASCAT Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. 23103227

2012
dbSNP: rs2494938
rs2494938
LRFN2
A 0.800 GeneticVariation GWASDB Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. 23103227

2012
dbSNP: rs11571833
rs11571833
BRCA2
0.720 GeneticVariation BEFREE Association of BRCA2 K3326* With Small Cell Lung Cancer and Squamous Cell Cancer of the Skin. 29767749

2018
dbSNP: rs11571833
rs11571833
BRCA2
0.720 GeneticVariation BEFREE We analyzed the association between BRCA2 SNP rs11571833 and upper aerodigestive tract (UADT) cancer risk with multivariable unconditional logistic regression adjusted by sex and combinations of study and country for 5942 UADT squamous cell carcinoma case patients and 8086 control patients from nine different studies.All statistical tests were two-sided. rs11571833 was associated with UADT cancers (odds ratio = 2.53, 95% confidence interval = 1.89 to 3.38, P = 3x10(-10)) and was present in European, Latin American, and Indian populations but extremely rare in Japanese populations. 25838448

2015
dbSNP: rs11571833
rs11571833
BRCA2
T 0.720 GeneticVariation GWASCAT Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer. 24880342

2014
dbSNP: rs1126809
rs1126809
TYR ; LOC107984363
A 0.710 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs12203592
rs12203592
IRF4
T 0.710 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs1800407
rs1800407
OCA2
T 0.710 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs1126809
rs1126809
TYR ; LOC107984363
A 0.710 GeneticVariation GWASCAT Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma. 26829030

2016
dbSNP: rs12203592
rs12203592
IRF4
T 0.710 GeneticVariation GWASCAT Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma. 26829030

2016
dbSNP: rs16891982
rs16891982
SLC45A2
0.710 GeneticVariation GWASCAT Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma. 26829030

2016
dbSNP: rs12296850
rs12296850 		A 0.710 GeneticVariation GWASDB We found that rs12296850 in SLC17A8-NR1H4 gene region at12q23.1 was significantly associated with risk of lung SqCC at genome-wide significance level [additive model: odds ratio (OR) = 0.78, 95% confidence interval (CI) = 0.72-0.84, P = 1.19×10(-10)]. 23341777

2013
dbSNP: rs12296850
rs12296850 		0.710 GeneticVariation BEFREE We found that rs12296850 in SLC17A8-NR1H4 gene region at12q23.1 was significantly associated with risk of lung SqCC at genome-wide significance level [additive model: odds ratio (OR) = 0.78, 95% confidence interval (CI) = 0.72-0.84, P = 1.19×10(-10)]. 23341777

2013
dbSNP: rs12203592
rs12203592
IRF4
0.710 GeneticVariation BEFREE Along with two known pigmentation loci, MC1R and OCA2, the IRF4 rs12203592 T allele was associated with an increased risk of each type of skin cancer (P value, 6.6 × 10(-4) for melanoma, 7.0 × 10(-7) for SCC, and 0.04 for BCC). 21270109

2011
dbSNP: rs1126809
rs1126809
TYR ; LOC107984363
0.710 GeneticVariation BEFREE The TYR haplotype carrying only the Arg402Gln variant allele was significantly associated with SCC risk (OR, 1.35; 95% CI, 1.04-1.74). 19384953

2009
dbSNP: rs16891982
rs16891982
SLC45A2
0.710 GeneticVariation BEFREE A melanoma- and pigmentation-associated variant in the SLC45A2 gene, L374F, is associated with risk of both BCC and squamous cell carcinoma. 19578363

2009
dbSNP: rs1800407
rs1800407
OCA2
0.710 GeneticVariation BEFREE The TYR haplotype carrying only the Arg402Gln variant allele was significantly associated with SCC risk (OR, 1.35; 95% CI, 1.04-1.74). 19384953

2009
dbSNP: rs10810657
rs10810657 		A 0.700 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs11707807
rs11707807
LPP
G 0.700 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs117984432
rs117984432
ANKRD11
C 0.700 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019
dbSNP: rs1246946
rs1246946 		C 0.700 GeneticVariation GWASCAT Combined analysis of keratinocyte cancers identifies novel genome-wide loci. 31174203

2019