Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2069705
rs2069705
0.010 GeneticVariation BEFREE SLE susceptibility association was significant with rs2069705 in the promoter (adjusted OR 2.27, p=0.0024) and marginal with rs3181032 in the promoter (p=0.037), rs2430561 in intron 1 (p=0.022) and rs2069718 in intron 3 (p=0.026) in a recessive genetic model. 19919944

2010

dbSNP: rs3181032
rs3181032
0.010 GeneticVariation BEFREE SLE susceptibility association was significant with rs2069705 in the promoter (adjusted OR 2.27, p=0.0024) and marginal with rs3181032 in the promoter (p=0.037), rs2430561 in intron 1 (p=0.022) and rs2069718 in intron 3 (p=0.026) in a recessive genetic model. 19919944

2010

dbSNP: rs2430561
rs2430561
0.010 GeneticVariation BEFREE SLE susceptibility association was significant with rs2069705 in the promoter (adjusted OR 2.27, p=0.0024) and marginal with rs3181032 in the promoter (p=0.037), rs2430561 in intron 1 (p=0.022) and rs2069718 in intron 3 (p=0.026) in a recessive genetic model. 19919944

2010

dbSNP: rs2069718
rs2069718
0.010 GeneticVariation BEFREE SLE susceptibility association was significant with rs2069705 in the promoter (adjusted OR 2.27, p=0.0024) and marginal with rs3181032 in the promoter (p=0.037), rs2430561 in intron 1 (p=0.022) and rs2069718 in intron 3 (p=0.026) in a recessive genetic model. 19919944

2010

dbSNP: rs548234
rs548234
0.010 GeneticVariation BEFREE SLE was associated with frequency of rs548234 (P = 0.010; odds ratio [OR] = 1.298), rs2736340 (P = 2.47 × 10<sup>-5</sup> ; OR = 1.574) and rs10516487 (P = 0.002; OR = 0.642). 26420661

2016

dbSNP: rs2736340
rs2736340
0.010 GeneticVariation BEFREE SLE was associated with frequency of rs548234 (P = 0.010; odds ratio [OR] = 1.298), rs2736340 (P = 2.47 × 10<sup>-5</sup> ; OR = 1.574) and rs10516487 (P = 0.002; OR = 0.642). 26420661

2016

dbSNP: rs10516487
rs10516487
0.020 GeneticVariation BEFREE SLE was associated with frequency of rs548234 (P = 0.010; odds ratio [OR] = 1.298), rs2736340 (P = 2.47 × 10<sup>-5</sup> ; OR = 1.574) and rs10516487 (P = 0.002; OR = 0.642). 26420661

2016

dbSNP: rs12720356
rs12720356
0.010 GeneticVariation BEFREE SLE protection was associated with TYK2 risk infection variants affecting residually its catalytic domain, rs12720356 (OR = 0.308; p = 0.041) and rs34536443 (OR = 0.370; p = 0.034), but not with rs2304256, rs12720270, and rs280500. 31434951

2019

dbSNP: rs34536443
rs34536443
0.010 GeneticVariation BEFREE SLE protection was associated with TYK2 risk infection variants affecting residually its catalytic domain, rs12720356 (OR = 0.308; p = 0.041) and rs34536443 (OR = 0.370; p = 0.034), but not with rs2304256, rs12720270, and rs280500. 31434951

2019

dbSNP: rs2304256
rs2304256
0.010 GeneticVariation BEFREE SLE protection was associated with TYK2 risk infection variants affecting residually its catalytic domain, rs12720356 (OR = 0.308; p = 0.041) and rs34536443 (OR = 0.370; p = 0.034), but not with rs2304256, rs12720270, and rs280500. 31434951

2019

dbSNP: rs12720270
rs12720270
0.010 GeneticVariation BEFREE SLE protection was associated with TYK2 risk infection variants affecting residually its catalytic domain, rs12720356 (OR = 0.308; p = 0.041) and rs34536443 (OR = 0.370; p = 0.034), but not with rs2304256, rs12720270, and rs280500. 31434951

2019

dbSNP: rs280500
rs280500
0.010 GeneticVariation BEFREE SLE protection was associated with TYK2 risk infection variants affecting residually its catalytic domain, rs12720356 (OR = 0.308; p = 0.041) and rs34536443 (OR = 0.370; p = 0.034), but not with rs2304256, rs12720270, and rs280500. 31434951

2019

dbSNP: rs1799983
rs1799983
0.010 GeneticVariation BEFREE Glu298Asp eNOS polymorphism is not associated with SLE. 19318399

2009

dbSNP: rs4581
rs4581
0.010 GeneticVariation BEFREE Val/Leu247 polymorphism of β2-glycoprotein I and thrombosis in Chinese patients with SLE. 24661363

2015

dbSNP: rs929763
rs929763
0.010 GeneticVariation BEFREE Additional analysis showed that the genotype of the rs929763 and rs3805455 of the GABRP gene were also significantly associated with female SLE patients (P < 0.0001, P = 0.005, resp.). 26634217

2015

dbSNP: rs3805455
rs3805455
0.010 GeneticVariation BEFREE Additional analysis showed that the genotype of the rs929763 and rs3805455 of the GABRP gene were also significantly associated with female SLE patients (P < 0.0001, P = 0.005, resp.). 26634217

2015

dbSNP: rs2476601
rs2476601
0.030 GeneticVariation BEFREE Association of the PTPN22 R620W polymorphism with increased risk for SLE in the genetically homogeneous population of Crete. 21543514

2011

dbSNP: rs7574865
rs7574865
0.010 GeneticVariation BEFREE Furthermore, the stratified meta-analysis also demonstrate that the STAT4 rs7574865 polymorphism is associated with the presence of autoantibodies with systemic reactivity (anti-ds-DNA antibodies) in SLE patients (OR = 1.37; 95% CI = 1.21 - 1.56, P = 1.12 × 10(-6)). 23628400

2013

dbSNP: rs3824662
rs3824662
0.010 GeneticVariation BEFREE GATA3 rs3824662 is not associated with susceptibility to SLE either in adult or in pediatric patients; however, in pSLE patients, the heterozygous AC genotype could be considered a risk factor for LN. 30301440

2018

dbSNP: rs2476601
rs2476601
0.030 GeneticVariation BEFREE Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE. 15273934

2004

dbSNP: rs2397084
rs2397084
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016

dbSNP: rs549908
rs549908
0.010 GeneticVariation BEFREE IL-18 105 A>C polymorphism contributes to renal manifestations in patients with SLE. 19387647

2009

dbSNP: rs3077
rs3077
0.010 GeneticVariation BEFREE In conclusion, HLA-DP polymorphisms (rs3077 and rs9277535) were associated with SLE susceptibility and the levels of some inflammatory cytokines in SLE patients. 28094303

2017

dbSNP: rs9277535
rs9277535
0.010 GeneticVariation BEFREE In conclusion, HLA-DP polymorphisms (rs3077 and rs9277535) were associated with SLE susceptibility and the levels of some inflammatory cytokines in SLE patients. 28094303

2017

dbSNP: rs1061622
rs1061622
0.010 GeneticVariation BEFREE Lack of association between the Met196Arg polymorphism in the TNFR2 gene and autoimmune diseases accompanied by vasculitis including SLE in Japanese. 11169260

2001