Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121907936
rs121907936
GAA
0.810 GeneticVariation BEFREE Sequencing of the cDNA from a cell line (GM 244) derived from a patient with Pompe disease demonstrated a T953-to-C transition that predicted a methionine-to-threonine substitution at codon 318. 1652892

1991

dbSNP: rs28940868
rs28940868
GAA
0.810 GeneticVariation BEFREE The conservative substitution Asp-645-->Glu in lysosomal alpha-glucosidase affects transport and phosphorylation of the enzyme in an adult patient with glycogen-storage disease type II. 8094613

1993

dbSNP: rs757700700
rs757700700
GAA
0.810 GeneticVariation BEFREE In this study, we present four mutations found in three Japanese patients with the juvenile form of glycogen storage disease type II; three of these mutations were new (R224W, S619R, and R660H). 14643388

2003

dbSNP: rs776948121
rs776948121
GAA
0.810 GeneticVariation BEFREE A de novo 13 nt deletion, a newly identified C647W missense mutation and a deletion of exon 18 in infantile onset glycogen storage disease type II (GSDII). 7981676

1994

dbSNP: rs121907942
rs121907942
GAA
0.720 GeneticVariation BEFREE The effect of a single base pair deletion (delta T525) and a C1634T missense mutation (pro545leu) on the expression of lysosomal alpha-glucosidase in patients with glycogen storage disease type II. 7881422

1994

dbSNP: rs121907942
rs121907942
GAA
0.720 GeneticVariation BEFREE In a new transgenic mouse model of Pompe disease that expresses human P545L on a Gaa knockout background (Tg/KO) and is characterized by reduced GAA activity and elevated glycogen levels in disease-relevant tissues, daily oral administration of AT2220 for 4 weeks resulted in significant and dose-dependent increases in mature lysosomal GAA isoforms and GAA activity in heart and skeletal muscles. 25036864

2014

dbSNP: rs765718882
rs765718882
GAA
0.720 GeneticVariation BEFREE DNA analysis demonstrated novel mutation E888X of acid alpha-glucosidase gene with compound heterozygosity IVS1/E888X, confirming diagnosis of Pompe disease. 16531044

2006

dbSNP: rs765718882
rs765718882
GAA
0.720 GeneticVariation BEFREE Generation of induced pluripotent stem cells (iPSCs) from an infant with Pompe disease carrying with compound mutations of R608X and E888X in GAA gene. 31743840

2019

dbSNP: rs1800312
rs1800312
GAA
0.710 GeneticVariation BEFREE The genotype/phenotype correlations indicated that c.2238G > C (p.W746C) is correlated with juvenile- onset GSDII and that c.872T > C (p.L291P) and c.1411_1414del (p.E471fsX5) are correlated with infantile-onset GSDII. 18458862

2008

dbSNP: rs1800307
rs1800307
GAA
0.030 GeneticVariation BEFREE The high frequency (3.3-3.9%) of acid α-glucosidase pseudodeficiency, c.[1726G>A; 2065G>A] homozygote (AA homozygote), in Asian populations complicates newborn screening for Pompe disease (glycogen storage disease type II or acid maltase deficiency) on dried blood spots, since AA homozygotes have a considerably low enzyme activity. 21320792

2011

dbSNP: rs1800307
rs1800307
GAA
0.030 GeneticVariation BEFREE Thus, it was difficult to distinguish newborns with c.[1726G>A; 2965G>A] alleles from newborns with pre-symptomatic Pompe disease using AαGlu assays in DBSs or fibroblasts; GAA gene sequencing was necessary. 31076647

2019

dbSNP: rs1800307
rs1800307
GAA
0.030 GeneticVariation BEFREE p.[G576S; E689K]: pathogenic combination or polymorphism in Pompe disease? 18301443

2008

dbSNP: rs1800309
rs1800309
GAA
0.020 GeneticVariation BEFREE p.[G576S; E689K]: pathogenic combination or polymorphism in Pompe disease? 18301443

2008

dbSNP: rs1800309
rs1800309
GAA
0.020 GeneticVariation BEFREE The high frequency (3.3-3.9%) of acid α-glucosidase pseudodeficiency, c.[1726G>A; 2065G>A] homozygote (AA homozygote), in Asian populations complicates newborn screening for Pompe disease (glycogen storage disease type II or acid maltase deficiency) on dried blood spots, since AA homozygotes have a considerably low enzyme activity. 21320792

2011

dbSNP: rs374569672
rs374569672
GAA
0.010 GeneticVariation BEFREE Of the remaining five cases, three p.V222M homozygotes, a benign variant, were classified by CLIR as false positives; two with genotypes of unknown significance, one likely informative, were categorized as Pompe disease. 29095812

2018

dbSNP: rs564758226
rs564758226
GAA
0.010 GeneticVariation BEFREE The deleterious effect of c.510C>T was also found in muscle cells, the main target cells in Pompe disease. 30922962

2019

dbSNP: rs749529161
rs749529161
GAA
0.010 GeneticVariation BEFREE Generation of induced pluripotent stem cells (iPSCs) from an infant with Pompe disease carrying with compound mutations of R608X and E888X in GAA gene. 31743840

2019

dbSNP: rs121907936
rs121907936
GAA
C 0.810 GeneticVariation CLINVAR Carrier testing for severe childhood recessive diseases by next-generation sequencing. 21228398

2011

dbSNP: rs121907936
rs121907936
GAA
C 0.810 GeneticVariation CLINVAR Sequencing of the cDNA from a cell line (GM 244) derived from a patient with Pompe disease demonstrated a T953-to-C transition that predicted a methionine-to-threonine substitution at codon 318. 1652892

1991

dbSNP: rs121907936
rs121907936
GAA
C 0.810 GeneticVariation CLINVAR Pompe disease in Austria: clinical, genetic and epidemiological aspects. 29181627

2018

dbSNP: rs121907936
rs121907936
GAA
C 0.810 GeneticVariation CLINVAR Sensitivity of whole exome sequencing in detecting infantile- and late-onset Pompe disease. 29122469

2017

dbSNP: rs28940868
rs28940868
GAA
A 0.810 CausalMutation CLINVAR A case of childhood Pompe disease demonstrating phenotypic variability of p.Asp645Asn. 15145338

2004

dbSNP: rs28940868
rs28940868
GAA
A 0.810 CausalMutation CLINVAR Later-onset Pompe disease: early detection and early treatment initiation enabled by newborn screening. 21232767

2011

dbSNP: rs28940868
rs28940868
GAA
A 0.810 CausalMutation CLINVAR Clinical and Molecular Characterization of Infantile-Onset Pompe Disease in Mainland Chinese Patients: Identification of Two Common Mutations. 28394184

2017

dbSNP: rs28940868
rs28940868
GAA
A 0.810 CausalMutation CLINVAR Molecular genetic study of Pompe disease in Chinese patients in Taiwan. 10338092

1999