Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1018001612
rs1018001612
0.020 GeneticVariation BEFREE These results indicate that the loss of function of APC/C-Cdh1 caused by Cdh1 Asp187Gly mutation is a new cause of prenatal microcephaly, psychomotor retardation, and severe epilepsy. 31318984

2019

dbSNP: rs1018001612
rs1018001612
0.020 GeneticVariation BEFREE (2019) in the current issue of the Journal of Neurochemistry, in which the authors describe a microcephalic boy carrying the novel heterozygous de novo missense mutation c.560A> G; p.Asp187Gly in Cdh1/Fzr1 encoding the APC/C E3-ubiquitin ligase cofactor CDH1. 31441503

2019

dbSNP: rs773550500
rs773550500
0.020 GeneticVariation BEFREE These results indicate that the loss of function of APC/C-Cdh1 caused by Cdh1 Asp187Gly mutation is a new cause of prenatal microcephaly, psychomotor retardation, and severe epilepsy. 31318984

2019

dbSNP: rs773550500
rs773550500
0.020 GeneticVariation BEFREE (2019) in the current issue of the Journal of Neurochemistry, in which the authors describe a microcephalic boy carrying the novel heterozygous de novo missense mutation c.560A> G; p.Asp187Gly in Cdh1/Fzr1 encoding the APC/C E3-ubiquitin ligase cofactor CDH1. 31441503

2019

dbSNP: rs730882242
rs730882242
0.020 GeneticVariation BEFREE Recently, however, a homozygous nonsense DIAPH1 mutation (c.2332C4T; p.Q778X) was reported in five siblings in a single family affected by microcephaly, blindness, early onset seizures, developmental delay, and bronchiectasis. 26463574

2016

dbSNP: rs730882242
rs730882242
0.020 GeneticVariation BEFREE Here, we show that patients with a homozygous nonsense DIAPH1 alteration (p.Gln778*) have MCP as well as reduced height and weight. diap1 (mDia1 knockout (KO))-deficient mice have grossly normal body and brain size. 24781755

2015

dbSNP: rs387907082
rs387907082
0.010 GeneticVariation BEFREE Here we utilized CRISPR/Cas9 approaches to generate three strains of WDR62 mutant mice; WDR62V66M/V66M and WDR62R439H/R439H mice recapitulate conserved missense mutations found in humans with microcephaly, with the third strain being a null allele (WDR62stop/stop). 31816041

2020

dbSNP: rs387907084
rs387907084
0.010 GeneticVariation BEFREE Here we utilized CRISPR/Cas9 approaches to generate three strains of WDR62 mutant mice; WDR62V66M/V66M and WDR62R439H/R439H mice recapitulate conserved missense mutations found in humans with microcephaly, with the third strain being a null allele (WDR62stop/stop). 31816041

2020

dbSNP: rs1455698435
rs1455698435
0.010 GeneticVariation BEFREE A homozygous frameshift variant [p.(Glu324LysfsTer12)] in AGMO has recently been reported in two male siblings with syndromic microcephaly. 31555905

2019

dbSNP: rs1799964
rs1799964
0.010 GeneticVariation BEFREE Moreover, rs1799964 SNP at tumor necrosis factor-α gene in CZS babies is associated with severe microcephaly (OR, 2.63; 95% CI, 1.13-6.21). 31352487

2019

dbSNP: rs199422124
rs199422124
0.010 GeneticVariation BEFREE A second MCPH1 BRCT1 domain variant (rs199422124C>G; p.Thr27Arg), reported to cause autosomal recessive microcephaly, was not detected in the participants tested here. 30859703

2019

dbSNP: rs34832477
rs34832477
0.010 GeneticVariation BEFREE Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. 31630790

2019

dbSNP: rs3775291
rs3775291
0.010 GeneticVariation BEFREE Association Between Zika Virus Microcephaly in Newborns With the rs3775291 Variant in Toll-Like Receptor 3 and rs1799964 Variant at Tumor Necrosis Factor-α Gene. 31352487

2019

dbSNP: rs766476013
rs766476013
0.010 GeneticVariation BEFREE A second MCPH1 BRCT1 domain variant (rs199422124C>G; p.Thr27Arg), reported to cause autosomal recessive microcephaly, was not detected in the participants tested here. 30859703

2019

dbSNP: rs1131692040
rs1131692040
0.010 GeneticVariation BEFREE The p.K78E substitution appears to be associated with severe microcephaly, seizures, hearing loss, growth retardation, cardiac defects, and dysmorphic facial features. 29066376

2018

dbSNP: rs1289819331
rs1289819331
0.010 GeneticVariation BEFREE We ruled out the syndromic and metabolic causes of microcephaly and subsequently conducted a panel of genetic diagnostic tests, including the clinical exome sequencing which revealed compound heterozygous mutations in MED 17 gene in both patients. p.Glu16fs was found to be inherited from the mother and p.Gly253Arg from the father. 30345598

2018

dbSNP: rs1372862248
rs1372862248
0.010 GeneticVariation BEFREE We here describe novel compound heterozygous missense variants, NM_133443:c.[400C>T] and NM_133443:[1435G>A], in the glutamic-pyruvic transaminase 2 (GPT2) gene in a large consanguineous family with two affected siblings diagnosed with microcephaly intellectual disability and developmental delay (IDD). 29226631

2018

dbSNP: rs727505397
rs727505397
0.010 GeneticVariation BEFREE Since heterozygosity of other aggregation-inducing mutations (e.g., CASK<sup>W919R</sup>) does not produce MICPCH, we suggest that the G659D mutation produces microcephaly by disrupting the CASK-neurexin interaction. 29426960

2018

dbSNP: rs1554263624
rs1554263624
0.010 GeneticVariation BEFREE In silico modeling, mouse fibroblasts spreading assays, and in vivo overexpression assays using zebrafish as a surrogate model demonstrated that the p.Cys18Tyr and p.Asn39Ser RAC1 variants function as dominant-negative alleles and result in microcephaly, reduced neuronal proliferation, and cerebellar abnormalities in vivo. 28886345

2017

dbSNP: rs1554264268
rs1554264268
0.010 GeneticVariation BEFREE Four individuals, each harboring one of c.53G>A (p.Cys18Tyr), c.116A>G (p.Asn39Ser), c.218C>T (p.Pro73Leu), and c.470G>A (p.Cys157Tyr) variants, were microcephalic, with head circumferences between -2.5 to -5 SD. 28886345

2017

dbSNP: rs587777034
rs587777034
0.010 GeneticVariation BEFREE Here, we detected two de novo p.Ser317Asn and p.His321Pro mutations in KIF2A in two patients with lissencephaly and microcephaly. 27747449

2017

dbSNP: rs775277800
rs775277800
0.010 GeneticVariation BEFREE Interestingly, the naturally occurring microcephaly-associated mutant, RTTN (A578P), shows a low affinity for STIL binding and blocks centriole assembly. 28811500

2017

dbSNP: rs201053854
rs201053854
0.010 GeneticVariation BEFREE Novel mutations c.28G>T (p.Ala10Ser) and c.189G>T (p.Glu63Asp) in WDR62 associated with early onset acanthosis and hyperkeratosis in a patient with autosomal recessive microcephaly type 2. 27852057

2016

dbSNP: rs587777623
rs587777623
0.010 GeneticVariation BEFREE Identification of a syndrome comprising microcephaly and intellectual disability but not white matter disease associated with a homozygous c.676C>T p.R226W DEAF1 mutation. 26834045

2016

dbSNP: rs774912957
rs774912957
0.010 GeneticVariation BEFREE Novel mutations c.28G>T (p.Ala10Ser) and c.189G>T (p.Glu63Asp) in WDR62 associated with early onset acanthosis and hyperkeratosis in a patient with autosomal recessive microcephaly type 2. 27852057

2016